miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21853 3' -52.1 NC_004902.1 + 18698 0.72 0.448162
Target:  5'- --gGCCcagGAUGCACAGGCGCAgCUAUaCCa -3'
miRNA:   3'- gaaCGG---UUAUGUGUCCGUGU-GGUG-GG- -5'
21853 3' -52.1 NC_004902.1 + 18817 0.68 0.716011
Target:  5'- -cUGCUAAcucucagaauauUGCACAGGCACAggCAgCCa -3'
miRNA:   3'- gaACGGUU------------AUGUGUCCGUGUg-GUgGG- -5'
21853 3' -52.1 NC_004902.1 + 18901 0.66 0.780961
Target:  5'- -cUGUCAacacaAUugACGGGCGgACCACagCCa -3'
miRNA:   3'- gaACGGU-----UAugUGUCCGUgUGGUG--GG- -5'
21853 3' -52.1 NC_004902.1 + 19179 0.66 0.801401
Target:  5'- --gGCUggAAUACaguGCAGGCACACUGCg- -3'
miRNA:   3'- gaaCGG--UUAUG---UGUCCGUGUGGUGgg -5'
21853 3' -52.1 NC_004902.1 + 21104 0.67 0.738162
Target:  5'- --gGUCAGUGCuaaGGGCACGCUgguugaugGCCUg -3'
miRNA:   3'- gaaCGGUUAUGug-UCCGUGUGG--------UGGG- -5'
21853 3' -52.1 NC_004902.1 + 21206 0.67 0.738162
Target:  5'- --gGUCAGUGCuaaGGGCACGCUgguugaugGCCUg -3'
miRNA:   3'- gaaCGGUUAUGug-UCCGUGUGG--------UGGG- -5'
21853 3' -52.1 NC_004902.1 + 21308 0.67 0.738162
Target:  5'- --gGUCAGUGCuaaGGGCACGCUgguugaugGCCUg -3'
miRNA:   3'- gaaCGGUUAUGug-UCCGUGUGG--------UGGG- -5'
21853 3' -52.1 NC_004902.1 + 21953 0.68 0.670726
Target:  5'- --aGCgCAGUGcCAUAGGCAuCACCugCa -3'
miRNA:   3'- gaaCG-GUUAU-GUGUCCGU-GUGGugGg -5'
21853 3' -52.1 NC_004902.1 + 24076 0.73 0.398591
Target:  5'- uCUUGCCAuUGCcCAGGCugACaauCACCUu -3'
miRNA:   3'- -GAACGGUuAUGuGUCCGugUG---GUGGG- -5'
21853 3' -52.1 NC_004902.1 + 24597 0.68 0.670726
Target:  5'- uUUGCUGAcaGCACAGGCuCGCCugUa -3'
miRNA:   3'- gAACGGUUa-UGUGUCCGuGUGGugGg -5'
21853 3' -52.1 NC_004902.1 + 25634 0.7 0.567624
Target:  5'- -cUGCCAAgcagGCAauuaagcaAGGCGCACCAgCa -3'
miRNA:   3'- gaACGGUUa---UGUg-------UCCGUGUGGUgGg -5'
21853 3' -52.1 NC_004902.1 + 26752 0.68 0.670726
Target:  5'- -aUGCCuccggGgGCuGGCACACUGCCg -3'
miRNA:   3'- gaACGGuua--UgUGuCCGUGUGGUGGg -5'
21853 3' -52.1 NC_004902.1 + 27771 0.68 0.693498
Target:  5'- -aUGCCcguUGCcCgAGGCACGcCCAUCCg -3'
miRNA:   3'- gaACGGuu-AUGuG-UCCGUGU-GGUGGG- -5'
21853 3' -52.1 NC_004902.1 + 27902 0.68 0.682138
Target:  5'- --aGUUAGaGCgaGCGGGCGCACCGCUg -3'
miRNA:   3'- gaaCGGUUaUG--UGUCCGUGUGGUGGg -5'
21853 3' -52.1 NC_004902.1 + 28119 0.74 0.370585
Target:  5'- -cUGUCAGUugGCAGGUGCAuaUCACUCa -3'
miRNA:   3'- gaACGGUUAugUGUCCGUGU--GGUGGG- -5'
21853 3' -52.1 NC_004902.1 + 28744 0.68 0.716011
Target:  5'- aCUUGCCAugguccagcuUGCGgAGGCcguCAUCGCCg -3'
miRNA:   3'- -GAACGGUu---------AUGUgUCCGu--GUGGUGGg -5'
21853 3' -52.1 NC_004902.1 + 29536 0.68 0.705919
Target:  5'- cCUUGUCGccuagcagucccugGCAgAuGGCACACCugCCg -3'
miRNA:   3'- -GAACGGUua------------UGUgU-CCGUGUGGugGG- -5'
21853 3' -52.1 NC_004902.1 + 30333 0.72 0.448162
Target:  5'- aCUUGCCG----ACAGGUGCACaauaGCCCu -3'
miRNA:   3'- -GAACGGUuaugUGUCCGUGUGg---UGGG- -5'
21853 3' -52.1 NC_004902.1 + 30415 0.7 0.556322
Target:  5'- --aGCCGGUGCAgaUAGGCuauuguGCACCugUCg -3'
miRNA:   3'- gaaCGGUUAUGU--GUCCG------UGUGGugGG- -5'
21853 3' -52.1 NC_004902.1 + 30467 0.68 0.682138
Target:  5'- --cGCCGuccacAUGCAgAGGCAUGCCAgCa -3'
miRNA:   3'- gaaCGGU-----UAUGUgUCCGUGUGGUgGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.