miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21853 3' -52.1 NC_004902.1 + 884 0.75 0.326978
Target:  5'- gCUUGCauggucggCAGUAC-CAGGCcCACCGCCUg -3'
miRNA:   3'- -GAACG--------GUUAUGuGUCCGuGUGGUGGG- -5'
21853 3' -52.1 NC_004902.1 + 1571 0.71 0.545086
Target:  5'- -cUGCCcGUGCAgAGGCAaaggccaAUUACCCa -3'
miRNA:   3'- gaACGGuUAUGUgUCCGUg------UGGUGGG- -5'
21853 3' -52.1 NC_004902.1 + 1632 0.76 0.265354
Target:  5'- uUUGCCucUGCACGGGCA-GCCAUCUg -3'
miRNA:   3'- gAACGGuuAUGUGUCCGUgUGGUGGG- -5'
21853 3' -52.1 NC_004902.1 + 2290 0.74 0.370585
Target:  5'- gUUGUCG--ACACAGGCAUcugaACCACCg -3'
miRNA:   3'- gAACGGUuaUGUGUCCGUG----UGGUGGg -5'
21853 3' -52.1 NC_004902.1 + 3150 0.66 0.780961
Target:  5'- -cUGCCAGggcacgcuCACAGGuuUugAUCGCCCc -3'
miRNA:   3'- gaACGGUUau------GUGUCC--GugUGGUGGG- -5'
21853 3' -52.1 NC_004902.1 + 4714 0.66 0.821069
Target:  5'- -cUGCCcucuGGUGCAgCAGGCAUGCU-CCUa -3'
miRNA:   3'- gaACGG----UUAUGU-GUCCGUGUGGuGGG- -5'
21853 3' -52.1 NC_004902.1 + 5522 0.67 0.727138
Target:  5'- --cGCCAu--CACGgacGGCACGCuCACCa -3'
miRNA:   3'- gaaCGGUuauGUGU---CCGUGUG-GUGGg -5'
21853 3' -52.1 NC_004902.1 + 5669 0.71 0.533924
Target:  5'- --cGCCAAcggACACAuGCugcacauCACCGCCCg -3'
miRNA:   3'- gaaCGGUUa--UGUGUcCGu------GUGGUGGG- -5'
21853 3' -52.1 NC_004902.1 + 5738 0.69 0.659275
Target:  5'- -cUGCCGGcucUGCugGuGCACugACCACCCc -3'
miRNA:   3'- gaACGGUU---AUGugUcCGUG--UGGUGGG- -5'
21853 3' -52.1 NC_004902.1 + 6111 0.66 0.830583
Target:  5'- -cUGCUGGgucugauccCGCAGGC-UACCACCUa -3'
miRNA:   3'- gaACGGUUau-------GUGUCCGuGUGGUGGG- -5'
21853 3' -52.1 NC_004902.1 + 6355 0.66 0.827752
Target:  5'- aUUGCCAaucagGUACugGuuguucgcauccuuGGCGagcucaauCGCCGCCCa -3'
miRNA:   3'- gAACGGU-----UAUGugU--------------CCGU--------GUGGUGGG- -5'
21853 3' -52.1 NC_004902.1 + 7596 0.69 0.636301
Target:  5'- --cGCCAggACACAGcauaggucuGCACACCAUUg -3'
miRNA:   3'- gaaCGGUuaUGUGUC---------CGUGUGGUGGg -5'
21853 3' -52.1 NC_004902.1 + 7973 1.13 0.000763
Target:  5'- uCUUGCCAAUACACAGGCACACCACCCa -3'
miRNA:   3'- -GAACGGUUAUGUGUCCGUGUGGUGGG- -5'
21853 3' -52.1 NC_004902.1 + 8459 0.72 0.437972
Target:  5'- --aGCCAAUAUgguaacgaGCAGGCAU-UCGCCCa -3'
miRNA:   3'- gaaCGGUUAUG--------UGUCCGUGuGGUGGG- -5'
21853 3' -52.1 NC_004902.1 + 10575 0.68 0.670726
Target:  5'- -cUGCCGAa--GCAGGCugGCCucaACUCu -3'
miRNA:   3'- gaACGGUUaugUGUCCGugUGG---UGGG- -5'
21853 3' -52.1 NC_004902.1 + 11031 0.72 0.468925
Target:  5'- -cUGCCAuUGCugGccuuGGCuACGCCGCCUa -3'
miRNA:   3'- gaACGGUuAUGugU----CCG-UGUGGUGGG- -5'
21853 3' -52.1 NC_004902.1 + 12083 0.66 0.811338
Target:  5'- cCUUGCU---GCACccAGGCcaccaucagauACACUGCCCg -3'
miRNA:   3'- -GAACGGuuaUGUG--UCCG-----------UGUGGUGGG- -5'
21853 3' -52.1 NC_004902.1 + 12980 0.69 0.659275
Target:  5'- -cUGCacu--CGCAGaGC-CACCACCCa -3'
miRNA:   3'- gaACGguuauGUGUC-CGuGUGGUGGG- -5'
21853 3' -52.1 NC_004902.1 + 15260 0.68 0.693498
Target:  5'- --cGUCGAUAguCAGGCugGCgGCgCCu -3'
miRNA:   3'- gaaCGGUUAUguGUCCGugUGgUG-GG- -5'
21853 3' -52.1 NC_004902.1 + 16148 0.67 0.74581
Target:  5'- -gUGCCcAUACcaacaacggcaguaACAGGCugauuuGCACCuGCCCa -3'
miRNA:   3'- gaACGGuUAUG--------------UGUCCG------UGUGG-UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.