miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21853 3' -52.1 NC_004902.1 + 38521 0.67 0.727138
Target:  5'- gUUGCCGAUAUucuccCAGGCAucCAUUGCCa -3'
miRNA:   3'- gAACGGUUAUGu----GUCCGU--GUGGUGGg -5'
21853 3' -52.1 NC_004902.1 + 24597 0.68 0.670726
Target:  5'- uUUGCUGAcaGCACAGGCuCGCCugUa -3'
miRNA:   3'- gAACGGUUa-UGUGUCCGuGUGGugGg -5'
21853 3' -52.1 NC_004902.1 + 30467 0.68 0.682138
Target:  5'- --cGCCGuccacAUGCAgAGGCAUGCCAgCa -3'
miRNA:   3'- gaaCGGU-----UAUGUgUCCGUGUGGUgGg -5'
21853 3' -52.1 NC_004902.1 + 15260 0.68 0.693498
Target:  5'- --cGUCGAUAguCAGGCugGCgGCgCCu -3'
miRNA:   3'- gaaCGGUUAUguGUCCGugUGgUG-GG- -5'
21853 3' -52.1 NC_004902.1 + 32632 0.68 0.693498
Target:  5'- aUUGCCcugGCACAGaGCccuGCCACUCa -3'
miRNA:   3'- gAACGGuuaUGUGUC-CGug-UGGUGGG- -5'
21853 3' -52.1 NC_004902.1 + 43831 0.68 0.704793
Target:  5'- -cUGCUGaggcGUACGCAGcgguGCGCGCUGCCUa -3'
miRNA:   3'- gaACGGU----UAUGUGUC----CGUGUGGUGGG- -5'
21853 3' -52.1 NC_004902.1 + 29536 0.68 0.705919
Target:  5'- cCUUGUCGccuagcagucccugGCAgAuGGCACACCugCCg -3'
miRNA:   3'- -GAACGGUua------------UGUgU-CCGUGUGGugGG- -5'
21853 3' -52.1 NC_004902.1 + 18817 0.68 0.716011
Target:  5'- -cUGCUAAcucucagaauauUGCACAGGCACAggCAgCCa -3'
miRNA:   3'- gaACGGUU------------AUGUGUCCGUGUg-GUgGG- -5'
21853 3' -52.1 NC_004902.1 + 28744 0.68 0.716011
Target:  5'- aCUUGCCAugguccagcuUGCGgAGGCcguCAUCGCCg -3'
miRNA:   3'- -GAACGGUu---------AUGUgUCCGu--GUGGUGGg -5'
21853 3' -52.1 NC_004902.1 + 38458 0.69 0.659275
Target:  5'- aUUGUacauGUGUACAGGCACGCUAUCUu -3'
miRNA:   3'- gAACGgu--UAUGUGUCCGUGUGGUGGG- -5'
21853 3' -52.1 NC_004902.1 + 5738 0.69 0.659275
Target:  5'- -cUGCCGGcucUGCugGuGCACugACCACCCc -3'
miRNA:   3'- gaACGGUU---AUGugUcCGUG--UGGUGGG- -5'
21853 3' -52.1 NC_004902.1 + 1571 0.71 0.545086
Target:  5'- -cUGCCcGUGCAgAGGCAaaggccaAUUACCCa -3'
miRNA:   3'- gaACGGuUAUGUgUCCGUg------UGGUGGG- -5'
21853 3' -52.1 NC_004902.1 + 2290 0.74 0.370585
Target:  5'- gUUGUCG--ACACAGGCAUcugaACCACCg -3'
miRNA:   3'- gAACGGUuaUGUGUCCGUG----UGGUGGg -5'
21853 3' -52.1 NC_004902.1 + 28119 0.74 0.370585
Target:  5'- -cUGUCAGUugGCAGGUGCAuaUCACUCa -3'
miRNA:   3'- gaACGGUUAugUGUCCGUGU--GGUGGG- -5'
21853 3' -52.1 NC_004902.1 + 24076 0.73 0.398591
Target:  5'- uCUUGCCAuUGCcCAGGCugACaauCACCUu -3'
miRNA:   3'- -GAACGGUuAUGuGUCCGugUG---GUGGG- -5'
21853 3' -52.1 NC_004902.1 + 8459 0.72 0.437972
Target:  5'- --aGCCAAUAUgguaacgaGCAGGCAU-UCGCCCa -3'
miRNA:   3'- gaaCGGUUAUG--------UGUCCGUGuGGUGGG- -5'
21853 3' -52.1 NC_004902.1 + 18698 0.72 0.448162
Target:  5'- --gGCCcagGAUGCACAGGCGCAgCUAUaCCa -3'
miRNA:   3'- gaaCGG---UUAUGUGUCCGUGU-GGUG-GG- -5'
21853 3' -52.1 NC_004902.1 + 30333 0.72 0.448162
Target:  5'- aCUUGCCG----ACAGGUGCACaauaGCCCu -3'
miRNA:   3'- -GAACGGUuaugUGUCCGUGUGg---UGGG- -5'
21853 3' -52.1 NC_004902.1 + 11031 0.72 0.468925
Target:  5'- -cUGCCAuUGCugGccuuGGCuACGCCGCCUa -3'
miRNA:   3'- gaACGGUuAUGugU----CCG-UGUGGUGGG- -5'
21853 3' -52.1 NC_004902.1 + 38310 0.71 0.511855
Target:  5'- --aGgCGAUACACAGGCuAUGCUGCCg -3'
miRNA:   3'- gaaCgGUUAUGUGUCCG-UGUGGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.