miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21853 3' -52.1 NC_004902.1 + 7973 1.13 0.000763
Target:  5'- uCUUGCCAAUACACAGGCACACCACCCa -3'
miRNA:   3'- -GAACGGUUAUGUGUCCGUGUGGUGGG- -5'
21853 3' -52.1 NC_004902.1 + 21206 0.67 0.738162
Target:  5'- --gGUCAGUGCuaaGGGCACGCUgguugaugGCCUg -3'
miRNA:   3'- gaaCGGUUAUGug-UCCGUGUGG--------UGGG- -5'
21853 3' -52.1 NC_004902.1 + 16148 0.67 0.74581
Target:  5'- -gUGCCcAUACcaacaacggcaguaACAGGCugauuuGCACCuGCCCa -3'
miRNA:   3'- gaACGGuUAUG--------------UGUCCG------UGUGG-UGGG- -5'
21853 3' -52.1 NC_004902.1 + 38960 0.66 0.830583
Target:  5'- -gUGCCGAUGauCAGGCccAgACCAUCUg -3'
miRNA:   3'- gaACGGUUAUguGUCCG--UgUGGUGGG- -5'
21853 3' -52.1 NC_004902.1 + 30415 0.7 0.556322
Target:  5'- --aGCCGGUGCAgaUAGGCuauuguGCACCugUCg -3'
miRNA:   3'- gaaCGGUUAUGU--GUCCG------UGUGGugGG- -5'
21853 3' -52.1 NC_004902.1 + 25634 0.7 0.567624
Target:  5'- -cUGCCAAgcagGCAauuaagcaAGGCGCACCAgCa -3'
miRNA:   3'- gaACGGUUa---UGUg-------UCCGUGUGGUgGg -5'
21853 3' -52.1 NC_004902.1 + 12980 0.69 0.659275
Target:  5'- -cUGCacu--CGCAGaGC-CACCACCCa -3'
miRNA:   3'- gaACGguuauGUGUC-CGuGUGGUGGG- -5'
21853 3' -52.1 NC_004902.1 + 21953 0.68 0.670726
Target:  5'- --aGCgCAGUGcCAUAGGCAuCACCugCa -3'
miRNA:   3'- gaaCG-GUUAU-GUGUCCGU-GUGGugGg -5'
21853 3' -52.1 NC_004902.1 + 27902 0.68 0.682138
Target:  5'- --aGUUAGaGCgaGCGGGCGCACCGCUg -3'
miRNA:   3'- gaaCGGUUaUG--UGUCCGUGUGGUGGg -5'
21853 3' -52.1 NC_004902.1 + 21308 0.67 0.738162
Target:  5'- --gGUCAGUGCuaaGGGCACGCUgguugaugGCCUg -3'
miRNA:   3'- gaaCGGUUAUGug-UCCGUGUGG--------UGGG- -5'
21853 3' -52.1 NC_004902.1 + 27771 0.68 0.693498
Target:  5'- -aUGCCcguUGCcCgAGGCACGcCCAUCCg -3'
miRNA:   3'- gaACGGuu-AUGuG-UCCGUGU-GGUGGG- -5'
21853 3' -52.1 NC_004902.1 + 26752 0.68 0.670726
Target:  5'- -aUGCCuccggGgGCuGGCACACUGCCg -3'
miRNA:   3'- gaACGGuua--UgUGuCCGUGUGGUGGg -5'
21853 3' -52.1 NC_004902.1 + 1632 0.76 0.265354
Target:  5'- uUUGCCucUGCACGGGCA-GCCAUCUg -3'
miRNA:   3'- gAACGGuuAUGUGUCCGUgUGGUGGG- -5'
21853 3' -52.1 NC_004902.1 + 35501 0.68 0.716011
Target:  5'- --aGCCuaagugGCugGGGC-CACCACUUg -3'
miRNA:   3'- gaaCGGuua---UGugUCCGuGUGGUGGG- -5'
21853 3' -52.1 NC_004902.1 + 33809 0.71 0.533924
Target:  5'- uCUUGaacuuaACACAGGUACGCCACUg -3'
miRNA:   3'- -GAACgguua-UGUGUCCGUGUGGUGGg -5'
21853 3' -52.1 NC_004902.1 + 10575 0.68 0.670726
Target:  5'- -cUGCCGAa--GCAGGCugGCCucaACUCu -3'
miRNA:   3'- gaACGGUUaugUGUCCGugUGG---UGGG- -5'
21853 3' -52.1 NC_004902.1 + 5522 0.67 0.727138
Target:  5'- --cGCCAu--CACGgacGGCACGCuCACCa -3'
miRNA:   3'- gaaCGGUuauGUGU---CCGUGUG-GUGGg -5'
21853 3' -52.1 NC_004902.1 + 21104 0.67 0.738162
Target:  5'- --gGUCAGUGCuaaGGGCACGCUgguugaugGCCUg -3'
miRNA:   3'- gaaCGGUUAUGug-UCCGUGUGG--------UGGG- -5'
21853 3' -52.1 NC_004902.1 + 5669 0.71 0.533924
Target:  5'- --cGCCAAcggACACAuGCugcacauCACCGCCCg -3'
miRNA:   3'- gaaCGGUUa--UGUGUcCGu------GUGGUGGG- -5'
21853 3' -52.1 NC_004902.1 + 7596 0.69 0.636301
Target:  5'- --cGCCAggACACAGcauaggucuGCACACCAUUg -3'
miRNA:   3'- gaaCGGUuaUGUGUC---------CGUGUGGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.