Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21853 | 3' | -52.1 | NC_004902.1 | + | 7973 | 1.13 | 0.000763 |
Target: 5'- uCUUGCCAAUACACAGGCACACCACCCa -3' miRNA: 3'- -GAACGGUUAUGUGUCCGUGUGGUGGG- -5' |
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21853 | 3' | -52.1 | NC_004902.1 | + | 1632 | 0.76 | 0.265354 |
Target: 5'- uUUGCCucUGCACGGGCA-GCCAUCUg -3' miRNA: 3'- gAACGGuuAUGUGUCCGUgUGGUGGG- -5' |
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21853 | 3' | -52.1 | NC_004902.1 | + | 884 | 0.75 | 0.326978 |
Target: 5'- gCUUGCauggucggCAGUAC-CAGGCcCACCGCCUg -3' miRNA: 3'- -GAACG--------GUUAUGuGUCCGuGUGGUGGG- -5' |
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21853 | 3' | -52.1 | NC_004902.1 | + | 28119 | 0.74 | 0.370585 |
Target: 5'- -cUGUCAGUugGCAGGUGCAuaUCACUCa -3' miRNA: 3'- gaACGGUUAugUGUCCGUGU--GGUGGG- -5' |
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21853 | 3' | -52.1 | NC_004902.1 | + | 2290 | 0.74 | 0.370585 |
Target: 5'- gUUGUCG--ACACAGGCAUcugaACCACCg -3' miRNA: 3'- gAACGGUuaUGUGUCCGUG----UGGUGGg -5' |
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21853 | 3' | -52.1 | NC_004902.1 | + | 24076 | 0.73 | 0.398591 |
Target: 5'- uCUUGCCAuUGCcCAGGCugACaauCACCUu -3' miRNA: 3'- -GAACGGUuAUGuGUCCGugUG---GUGGG- -5' |
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21853 | 3' | -52.1 | NC_004902.1 | + | 8459 | 0.72 | 0.437972 |
Target: 5'- --aGCCAAUAUgguaacgaGCAGGCAU-UCGCCCa -3' miRNA: 3'- gaaCGGUUAUG--------UGUCCGUGuGGUGGG- -5' |
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21853 | 3' | -52.1 | NC_004902.1 | + | 30333 | 0.72 | 0.448162 |
Target: 5'- aCUUGCCG----ACAGGUGCACaauaGCCCu -3' miRNA: 3'- -GAACGGUuaugUGUCCGUGUGg---UGGG- -5' |
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21853 | 3' | -52.1 | NC_004902.1 | + | 18698 | 0.72 | 0.448162 |
Target: 5'- --gGCCcagGAUGCACAGGCGCAgCUAUaCCa -3' miRNA: 3'- gaaCGG---UUAUGUGUCCGUGU-GGUG-GG- -5' |
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21853 | 3' | -52.1 | NC_004902.1 | + | 11031 | 0.72 | 0.468925 |
Target: 5'- -cUGCCAuUGCugGccuuGGCuACGCCGCCUa -3' miRNA: 3'- gaACGGUuAUGugU----CCG-UGUGGUGGG- -5' |
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21853 | 3' | -52.1 | NC_004902.1 | + | 38310 | 0.71 | 0.511855 |
Target: 5'- --aGgCGAUACACAGGCuAUGCUGCCg -3' miRNA: 3'- gaaCgGUUAUGUGUCCG-UGUGGUGGg -5' |
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21853 | 3' | -52.1 | NC_004902.1 | + | 5669 | 0.71 | 0.533924 |
Target: 5'- --cGCCAAcggACACAuGCugcacauCACCGCCCg -3' miRNA: 3'- gaaCGGUUa--UGUGUcCGu------GUGGUGGG- -5' |
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21853 | 3' | -52.1 | NC_004902.1 | + | 33809 | 0.71 | 0.533924 |
Target: 5'- uCUUGaacuuaACACAGGUACGCCACUg -3' miRNA: 3'- -GAACgguua-UGUGUCCGUGUGGUGGg -5' |
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21853 | 3' | -52.1 | NC_004902.1 | + | 1571 | 0.71 | 0.545086 |
Target: 5'- -cUGCCcGUGCAgAGGCAaaggccaAUUACCCa -3' miRNA: 3'- gaACGGuUAUGUgUCCGUg------UGGUGGG- -5' |
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21853 | 3' | -52.1 | NC_004902.1 | + | 30415 | 0.7 | 0.556322 |
Target: 5'- --aGCCGGUGCAgaUAGGCuauuguGCACCugUCg -3' miRNA: 3'- gaaCGGUUAUGU--GUCCG------UGUGGugGG- -5' |
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21853 | 3' | -52.1 | NC_004902.1 | + | 25634 | 0.7 | 0.567624 |
Target: 5'- -cUGCCAAgcagGCAauuaagcaAGGCGCACCAgCa -3' miRNA: 3'- gaACGGUUa---UGUg-------UCCGUGUGGUgGg -5' |
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21853 | 3' | -52.1 | NC_004902.1 | + | 7596 | 0.69 | 0.636301 |
Target: 5'- --cGCCAggACACAGcauaggucuGCACACCAUUg -3' miRNA: 3'- gaaCGGUuaUGUGUC---------CGUGUGGUGGg -5' |
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21853 | 3' | -52.1 | NC_004902.1 | + | 12980 | 0.69 | 0.659275 |
Target: 5'- -cUGCacu--CGCAGaGC-CACCACCCa -3' miRNA: 3'- gaACGguuauGUGUC-CGuGUGGUGGG- -5' |
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21853 | 3' | -52.1 | NC_004902.1 | + | 5738 | 0.69 | 0.659275 |
Target: 5'- -cUGCCGGcucUGCugGuGCACugACCACCCc -3' miRNA: 3'- gaACGGUU---AUGugUcCGUG--UGGUGGG- -5' |
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21853 | 3' | -52.1 | NC_004902.1 | + | 38458 | 0.69 | 0.659275 |
Target: 5'- aUUGUacauGUGUACAGGCACGCUAUCUu -3' miRNA: 3'- gAACGgu--UAUGUGUCCGUGUGGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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