miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21865 3' -57.5 NC_004902.1 + 15882 0.66 0.548724
Target:  5'- aCCACggauauagGCCAGCaucuguGCACCuGggUUGCUc -3'
miRNA:   3'- -GGUGa-------CGGUCGg-----CGUGGuCuaGACGG- -5'
21865 3' -57.5 NC_004902.1 + 11326 0.66 0.548724
Target:  5'- aCCAUUuuaGCgCAGCCuCGCCGGccauguccAUCUGCUg -3'
miRNA:   3'- -GGUGA---CG-GUCGGcGUGGUC--------UAGACGG- -5'
21865 3' -57.5 NC_004902.1 + 36553 0.66 0.537991
Target:  5'- gCAgUGCCgccagcAGCCGguUCAGAcUgUGCCg -3'
miRNA:   3'- gGUgACGG------UCGGCguGGUCU-AgACGG- -5'
21865 3' -57.5 NC_004902.1 + 34753 0.66 0.537991
Target:  5'- aCAgUGCCuGCUGCaaguaaacauucGCCAGcgugcCUGCCa -3'
miRNA:   3'- gGUgACGGuCGGCG------------UGGUCua---GACGG- -5'
21865 3' -57.5 NC_004902.1 + 14662 0.66 0.536922
Target:  5'- gCCAg-GCaaaAGCUGUGCCGGGaugugugUCUGCCc -3'
miRNA:   3'- -GGUgaCGg--UCGGCGUGGUCU-------AGACGG- -5'
21865 3' -57.5 NC_004902.1 + 33453 0.66 0.527331
Target:  5'- cCCACUGCauccaGGCa--GCguGGUUUGCCu -3'
miRNA:   3'- -GGUGACGg----UCGgcgUGguCUAGACGG- -5'
21865 3' -57.5 NC_004902.1 + 14025 0.66 0.517806
Target:  5'- aCUGCUGUCaucaucugaucagguGGCCGCuuuuCUAGAuccuccguuacaucUCUGCCa -3'
miRNA:   3'- -GGUGACGG---------------UCGGCGu---GGUCU--------------AGACGG- -5'
21865 3' -57.5 NC_004902.1 + 41736 0.66 0.516751
Target:  5'- cCCACUGCUAgGCCaaacaggaaaaGUcCgGGGUCUGUCa -3'
miRNA:   3'- -GGUGACGGU-CGG-----------CGuGgUCUAGACGG- -5'
21865 3' -57.5 NC_004902.1 + 908 0.66 0.516751
Target:  5'- cCCACcGCCuggcgugguuGCUGCACacaGGGUCaugGCCu -3'
miRNA:   3'- -GGUGaCGGu---------CGGCGUGg--UCUAGa--CGG- -5'
21865 3' -57.5 NC_004902.1 + 20979 0.66 0.506258
Target:  5'- gCCACUGUgGuCUGCACagaAGAUaUUGCCg -3'
miRNA:   3'- -GGUGACGgUcGGCGUGg--UCUA-GACGG- -5'
21865 3' -57.5 NC_004902.1 + 32218 0.66 0.495856
Target:  5'- gCAUauCCAGCCcuGCGCgaAGAUCUGCUa -3'
miRNA:   3'- gGUGacGGUCGG--CGUGg-UCUAGACGG- -5'
21865 3' -57.5 NC_004902.1 + 968 0.67 0.465259
Target:  5'- aCCAC-GCCAgGCgGUggGCCuGGUaCUGCCg -3'
miRNA:   3'- -GGUGaCGGU-CGgCG--UGGuCUA-GACGG- -5'
21865 3' -57.5 NC_004902.1 + 34411 0.67 0.455279
Target:  5'- uCCGgcGCCGGCUGUACCGG--CUGCg -3'
miRNA:   3'- -GGUgaCGGUCGGCGUGGUCuaGACGg -5'
21865 3' -57.5 NC_004902.1 + 40842 0.67 0.445416
Target:  5'- gCGCgUGCaGGUaaUGCAgCCAGAUCUGCUg -3'
miRNA:   3'- gGUG-ACGgUCG--GCGU-GGUCUAGACGG- -5'
21865 3' -57.5 NC_004902.1 + 3561 0.68 0.435673
Target:  5'- gCCACUGCaucCAGUCGCAugaUCGcAUCUGCa -3'
miRNA:   3'- -GGUGACG---GUCGGCGU---GGUcUAGACGg -5'
21865 3' -57.5 NC_004902.1 + 34888 0.68 0.426054
Target:  5'- gCCAgguCUGCCAG--GCAuCCAGGUCUGUg -3'
miRNA:   3'- -GGU---GACGGUCggCGU-GGUCUAGACGg -5'
21865 3' -57.5 NC_004902.1 + 29667 0.68 0.416563
Target:  5'- uUugUGCCAGCCGaguaACCA--UCUGUUc -3'
miRNA:   3'- gGugACGGUCGGCg---UGGUcuAGACGG- -5'
21865 3' -57.5 NC_004902.1 + 42720 0.68 0.388882
Target:  5'- aCCAg-GCCGGCacCGUACCAaacuGGUCUGCg -3'
miRNA:   3'- -GGUgaCGGUCG--GCGUGGU----CUAGACGg -5'
21865 3' -57.5 NC_004902.1 + 25997 0.68 0.38798
Target:  5'- gCGCUGCCGcaaccaaucuuguGCC-UGCC-GAUCUGCCu -3'
miRNA:   3'- gGUGACGGU-------------CGGcGUGGuCUAGACGG- -5'
21865 3' -57.5 NC_004902.1 + 25833 0.69 0.379927
Target:  5'- aCCAUgacuuUGCCauacGGgaGCACCAGAuuuagcUCUGCCg -3'
miRNA:   3'- -GGUG-----ACGG----UCggCGUGGUCU------AGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.