miRNA display CGI

Results 1 - 8 of 8 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21899	5'	-58.3	NC_004902.1	+	34297	0.66	0.458691
	Target:  5'- cUCCUUGCuCGUGCAUgucaaGCAUCUGaGAg -3' miRNA:   3'- cAGGAACG-GUACGUGgg---CGUGGAC-CU- -5'
21899	5'	-58.3	NC_004902.1	+	30752	0.66	0.429158
	Target:  5'- aUUCUUGCUacGUGUGCCCuCACCUGa- -3' miRNA:   3'- cAGGAACGG--UACGUGGGcGUGGACcu -5'
21899	5'	-58.3	NC_004902.1	+	30665	0.67	0.410103
	Target:  5'- gGUCCUUGCCugcUGCGCCCuugucaACCaGGc -3' miRNA:   3'- -CAGGAACGGu--ACGUGGGcg----UGGaCCu -5'
21899	5'	-58.3	NC_004902.1	+	23325	0.68	0.347735
	Target:  5'- uUCCUaGCCAuUGUaACCUGCACCgccaGGAc -3' miRNA:   3'- cAGGAaCGGU-ACG-UGGGCGUGGa---CCU- -5'
21899	5'	-58.3	NC_004902.1	+	12392	0.69	0.291707
	Target:  5'- uUCCUuggugaucugUGCCAcacgugcUGCACCCuGCGCCUGu- -3' miRNA:   3'- cAGGA----------ACGGU-------ACGUGGG-CGUGGACcu -5'
21899	5'	-58.3	NC_004902.1	+	43348	0.7	0.244267
	Target:  5'- --gUUUGCCAUGCACCUuCACCUGu- -3' miRNA:   3'- cagGAACGGUACGUGGGcGUGGACcu -5'
21899	5'	-58.3	NC_004902.1	+	26456	0.72	0.19748
	Target:  5'- cUCCUUcaGCCAgcguggcGCAUCCGCAUCUGGc -3' miRNA:   3'- cAGGAA--CGGUa------CGUGGGCGUGGACCu -5'
21899	5'	-58.3	NC_004902.1	+	39497	1.09	0.000335
	Target:  5'- aGUCCUUGCCAUGCACCCGCACCUGGAg -3' miRNA:   3'- -CAGGAACGGUACGUGGGCGUGGACCU- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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