Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21964 | 3' | -54.4 | NC_004914.1 | + | 55445 | 0.72 | 0.421649 |
Target: 5'- aGGgAACAcCGCCAGCAGaGCCACCGa -3' miRNA: 3'- gUCgUUGUcGUGGUUGUCcUGGUGGU- -5' |
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21964 | 3' | -54.4 | NC_004914.1 | + | 60335 | 0.66 | 0.774039 |
Target: 5'- cCAGCcACAGCGCaCcAUAGccaACCGCCAg -3' miRNA: 3'- -GUCGuUGUCGUG-GuUGUCc--UGGUGGU- -5' |
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21964 | 3' | -54.4 | NC_004914.1 | + | 60346 | 0.66 | 0.732254 |
Target: 5'- aGGCGAaugcCACCAuuacugacauGCAGGugCGCCAg -3' miRNA: 3'- gUCGUUguc-GUGGU----------UGUCCugGUGGU- -5' |
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21964 | 3' | -54.4 | NC_004914.1 | + | 60976 | 0.72 | 0.393484 |
Target: 5'- aCAGCAGUAGCACCAA-AGGAaaCCAUCAc -3' miRNA: 3'- -GUCGUUGUCGUGGUUgUCCU--GGUGGU- -5' |
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21964 | 3' | -54.4 | NC_004914.1 | + | 62025 | 0.68 | 0.630018 |
Target: 5'- uGGCugaGACAGCACCAAaacuucgugcugacCGGGaaagaaucaacGCCGCCAg -3' miRNA: 3'- gUCG---UUGUCGUGGUU--------------GUCC-----------UGGUGGU- -5' |
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21964 | 3' | -54.4 | NC_004914.1 | + | 62604 | 0.68 | 0.622221 |
Target: 5'- -cGUAGCGGUGCCAGCGGuGGCUAUa- -3' miRNA: 3'- guCGUUGUCGUGGUUGUC-CUGGUGgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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