miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21972 3' -50.5 NC_004914.1 + 26715 1.13 0.002024
Target:  5'- aCCACCAACAACAUUACCGGCAGCACGg -3'
miRNA:   3'- -GGUGGUUGUUGUAAUGGCCGUCGUGC- -5'
21972 3' -50.5 NC_004914.1 + 7889 0.79 0.329545
Target:  5'- gCCACCGGCAGCAUccuUACUGaaAGCGCGa -3'
miRNA:   3'- -GGUGGUUGUUGUA---AUGGCcgUCGUGC- -5'
21972 3' -50.5 NC_004914.1 + 10922 0.78 0.3905
Target:  5'- uCCGCCAguACAGCGgaaUGCUcgGGCAGCAUGg -3'
miRNA:   3'- -GGUGGU--UGUUGUa--AUGG--CCGUCGUGC- -5'
21972 3' -50.5 NC_004914.1 + 18612 0.75 0.510487
Target:  5'- -gGCCAGCAACG-UAgCGGCGGaCGCGa -3'
miRNA:   3'- ggUGGUUGUUGUaAUgGCCGUC-GUGC- -5'
21972 3' -50.5 NC_004914.1 + 57770 0.74 0.553889
Target:  5'- aCCGCCAGCGACAggaauggacGCUGGCGGUg-- -3'
miRNA:   3'- -GGUGGUUGUUGUaa-------UGGCCGUCGugc -5'
21972 3' -50.5 NC_004914.1 + 24280 0.72 0.665652
Target:  5'- gCACCAAgGugacGCAaUACCGGCGGCguACGc -3'
miRNA:   3'- gGUGGUUgU----UGUaAUGGCCGUCG--UGC- -5'
21972 3' -50.5 NC_004914.1 + 35926 0.72 0.699023
Target:  5'- gCCGCCAuacCggUAUUGCa-GCGGCACGa -3'
miRNA:   3'- -GGUGGUu--GuuGUAAUGgcCGUCGUGC- -5'
21972 3' -50.5 NC_004914.1 + 5987 0.72 0.710026
Target:  5'- gCCACCGACu-CAUUACCGuGC-GUACc -3'
miRNA:   3'- -GGUGGUUGuuGUAAUGGC-CGuCGUGc -5'
21972 3' -50.5 NC_004914.1 + 19699 0.71 0.731783
Target:  5'- aCCGCCAGCAACcaUAUCaGGUacaAGCGCa -3'
miRNA:   3'- -GGUGGUUGUUGuaAUGG-CCG---UCGUGc -5'
21972 3' -50.5 NC_004914.1 + 29013 0.71 0.731783
Target:  5'- aCACCAaaGCAcgGUUGCgGGCAGCAa- -3'
miRNA:   3'- gGUGGU--UGUugUAAUGgCCGUCGUgc -5'
21972 3' -50.5 NC_004914.1 + 19587 0.71 0.731783
Target:  5'- gCAcCCGGCGACAUcuUACCGGuCAGC-Ca -3'
miRNA:   3'- gGU-GGUUGUUGUA--AUGGCC-GUCGuGc -5'
21972 3' -50.5 NC_004914.1 + 22557 0.71 0.742511
Target:  5'- gCCACCAaccGCGACcgUACCGGacCAGaACGc -3'
miRNA:   3'- -GGUGGU---UGUUGuaAUGGCC--GUCgUGC- -5'
21972 3' -50.5 NC_004914.1 + 6138 0.7 0.773948
Target:  5'- aCACCAcACAGCGUgACgGGgAGCugGu -3'
miRNA:   3'- gGUGGU-UGUUGUAaUGgCCgUCGugC- -5'
21972 3' -50.5 NC_004914.1 + 57346 0.7 0.784138
Target:  5'- uUCGCCAGCAugAgcgggaUACCGGgGGCGg- -3'
miRNA:   3'- -GGUGGUUGUugUa-----AUGGCCgUCGUgc -5'
21972 3' -50.5 NC_004914.1 + 26237 0.7 0.794163
Target:  5'- gCCGCCuGCuGGCGUgacaaACCGGCAuCACGg -3'
miRNA:   3'- -GGUGGuUG-UUGUAa----UGGCCGUcGUGC- -5'
21972 3' -50.5 NC_004914.1 + 20336 0.7 0.794163
Target:  5'- aCCGCCAuGCGugAUgcugaaACCGuGCAGCAgGa -3'
miRNA:   3'- -GGUGGU-UGUugUAa-----UGGC-CGUCGUgC- -5'
21972 3' -50.5 NC_004914.1 + 17033 0.69 0.823136
Target:  5'- aCCGCCcACAGgGUgACUGGCAG-ACGu -3'
miRNA:   3'- -GGUGGuUGUUgUAaUGGCCGUCgUGC- -5'
21972 3' -50.5 NC_004914.1 + 16489 0.69 0.841423
Target:  5'- ---aCGACAAUAUUGCUGGCAcCACa -3'
miRNA:   3'- ggugGUUGUUGUAAUGGCCGUcGUGc -5'
21972 3' -50.5 NC_004914.1 + 52556 0.69 0.841423
Target:  5'- gCGCCAGCcuuCGaaGCUGGCuGCGCGg -3'
miRNA:   3'- gGUGGUUGuu-GUaaUGGCCGuCGUGC- -5'
21972 3' -50.5 NC_004914.1 + 20091 0.69 0.858793
Target:  5'- -aGCCAGCAAUucaggaucgGUUGCCaGCuGCGCGc -3'
miRNA:   3'- ggUGGUUGUUG---------UAAUGGcCGuCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.