miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21972 3' -50.5 NC_004914.1 + 18612 0.75 0.510487
Target:  5'- -gGCCAGCAACG-UAgCGGCGGaCGCGa -3'
miRNA:   3'- ggUGGUUGUUGUaAUgGCCGUC-GUGC- -5'
21972 3' -50.5 NC_004914.1 + 6046 0.66 0.940649
Target:  5'- -aACCGuCAGCAUUAaguCCGGUgAGCAUGc -3'
miRNA:   3'- ggUGGUuGUUGUAAU---GGCCG-UCGUGC- -5'
21972 3' -50.5 NC_004914.1 + 11138 0.67 0.929835
Target:  5'- gCGCCGACGACAgcuccugucugUACUGuucaGCAGgGCGg -3'
miRNA:   3'- gGUGGUUGUUGUa----------AUGGC----CGUCgUGC- -5'
21972 3' -50.5 NC_004914.1 + 19614 0.67 0.923996
Target:  5'- gUACCuGAUAugGUUGCUGGCGGUGUGg -3'
miRNA:   3'- gGUGG-UUGUugUAAUGGCCGUCGUGC- -5'
21972 3' -50.5 NC_004914.1 + 2882 0.68 0.897773
Target:  5'- gCGCCuguuCAGCAgacACCGGCguuuaaGGCACa -3'
miRNA:   3'- gGUGGuu--GUUGUaa-UGGCCG------UCGUGc -5'
21972 3' -50.5 NC_004914.1 + 20691 0.68 0.890513
Target:  5'- uUCGCCcACAACAggaagugacGCCGGaAGCACa -3'
miRNA:   3'- -GGUGGuUGUUGUaa-------UGGCCgUCGUGc -5'
21972 3' -50.5 NC_004914.1 + 56763 0.69 0.858793
Target:  5'- gCCugCGGCAACGgcuuuCCGGCugauggucGUACGg -3'
miRNA:   3'- -GGugGUUGUUGUaau--GGCCGu-------CGUGC- -5'
21972 3' -50.5 NC_004914.1 + 16489 0.69 0.841423
Target:  5'- ---aCGACAAUAUUGCUGGCAcCACa -3'
miRNA:   3'- ggugGUUGUUGUAAUGGCCGUcGUGc -5'
21972 3' -50.5 NC_004914.1 + 52556 0.69 0.841423
Target:  5'- gCGCCAGCcuuCGaaGCUGGCuGCGCGg -3'
miRNA:   3'- gGUGGUUGuu-GUaaUGGCCGuCGUGC- -5'
21972 3' -50.5 NC_004914.1 + 17033 0.69 0.823136
Target:  5'- aCCGCCcACAGgGUgACUGGCAG-ACGu -3'
miRNA:   3'- -GGUGGuUGUUgUAaUGGCCGUCgUGC- -5'
21972 3' -50.5 NC_004914.1 + 20336 0.7 0.794163
Target:  5'- aCCGCCAuGCGugAUgcugaaACCGuGCAGCAgGa -3'
miRNA:   3'- -GGUGGU-UGUugUAa-----UGGC-CGUCGUgC- -5'
21972 3' -50.5 NC_004914.1 + 6138 0.7 0.773948
Target:  5'- aCACCAcACAGCGUgACgGGgAGCugGu -3'
miRNA:   3'- gGUGGU-UGUUGUAaUGgCCgUCGugC- -5'
21972 3' -50.5 NC_004914.1 + 22557 0.71 0.742511
Target:  5'- gCCACCAaccGCGACcgUACCGGacCAGaACGc -3'
miRNA:   3'- -GGUGGU---UGUUGuaAUGGCC--GUCgUGC- -5'
21972 3' -50.5 NC_004914.1 + 57770 0.74 0.553889
Target:  5'- aCCGCCAGCGACAggaauggacGCUGGCGGUg-- -3'
miRNA:   3'- -GGUGGUUGUUGUaa-------UGGCCGUCGugc -5'
21972 3' -50.5 NC_004914.1 + 2790 0.67 0.929835
Target:  5'- -aGCCAGCAACAgucuucccaccUGCUGGCAGgCAa- -3'
miRNA:   3'- ggUGGUUGUUGUa----------AUGGCCGUC-GUgc -5'
21972 3' -50.5 NC_004914.1 + 31433 0.67 0.929835
Target:  5'- aCCGCCAGCuACua-ACUGGCGGUu-- -3'
miRNA:   3'- -GGUGGUUGuUGuaaUGGCCGUCGugc -5'
21972 3' -50.5 NC_004914.1 + 21485 0.66 0.940649
Target:  5'- gCgACCAGCGGCGUUuuCCGGU-GC-CGg -3'
miRNA:   3'- -GgUGGUUGUUGUAAu-GGCCGuCGuGC- -5'
21972 3' -50.5 NC_004914.1 + 30697 0.66 0.945142
Target:  5'- aUCAUCGACAACGccGCUGaaaucgaagaauuGCAGCGCa -3'
miRNA:   3'- -GGUGGUUGUUGUaaUGGC-------------CGUCGUGc -5'
21972 3' -50.5 NC_004914.1 + 58805 0.66 0.945627
Target:  5'- aCCugCGGCAAuCAgcGCCagaacGGCAGC-CGa -3'
miRNA:   3'- -GGugGUUGUU-GUaaUGG-----CCGUCGuGC- -5'
21972 3' -50.5 NC_004914.1 + 26715 1.13 0.002024
Target:  5'- aCCACCAACAACAUUACCGGCAGCACGg -3'
miRNA:   3'- -GGUGGUUGUUGUAAUGGCCGUCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.