miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21972 3' -50.5 NC_004914.1 + 29013 0.71 0.731783
Target:  5'- aCACCAaaGCAcgGUUGCgGGCAGCAa- -3'
miRNA:   3'- gGUGGU--UGUugUAAUGgCCGUCGUgc -5'
21972 3' -50.5 NC_004914.1 + 19587 0.71 0.731783
Target:  5'- gCAcCCGGCGACAUcuUACCGGuCAGC-Ca -3'
miRNA:   3'- gGU-GGUUGUUGUA--AUGGCC-GUCGuGc -5'
21972 3' -50.5 NC_004914.1 + 5987 0.72 0.710026
Target:  5'- gCCACCGACu-CAUUACCGuGC-GUACc -3'
miRNA:   3'- -GGUGGUUGuuGUAAUGGC-CGuCGUGc -5'
21972 3' -50.5 NC_004914.1 + 35926 0.72 0.699023
Target:  5'- gCCGCCAuacCggUAUUGCa-GCGGCACGa -3'
miRNA:   3'- -GGUGGUu--GuuGUAAUGgcCGUCGUGC- -5'
21972 3' -50.5 NC_004914.1 + 24280 0.72 0.665652
Target:  5'- gCACCAAgGugacGCAaUACCGGCGGCguACGc -3'
miRNA:   3'- gGUGGUUgU----UGUaAUGGCCGUCG--UGC- -5'
21972 3' -50.5 NC_004914.1 + 10922 0.78 0.3905
Target:  5'- uCCGCCAguACAGCGgaaUGCUcgGGCAGCAUGg -3'
miRNA:   3'- -GGUGGU--UGUUGUa--AUGG--CCGUCGUGC- -5'
21972 3' -50.5 NC_004914.1 + 19537 0.68 0.875177
Target:  5'- aUCACUGACAGCcUUACCGGUuGC-Cu -3'
miRNA:   3'- -GGUGGUUGUUGuAAUGGCCGuCGuGc -5'
21972 3' -50.5 NC_004914.1 + 62145 0.68 0.882979
Target:  5'- aUCuCUGGCGGCGUUGauucuuucCCGGuCAGCACGa -3'
miRNA:   3'- -GGuGGUUGUUGUAAU--------GGCC-GUCGUGC- -5'
21972 3' -50.5 NC_004914.1 + 11633 0.68 0.882979
Target:  5'- uUACCGGCAAac---CCGGCGGCAa- -3'
miRNA:   3'- gGUGGUUGUUguaauGGCCGUCGUgc -5'
21972 3' -50.5 NC_004914.1 + 58805 0.66 0.945627
Target:  5'- aCCugCGGCAAuCAgcGCCagaacGGCAGC-CGa -3'
miRNA:   3'- -GGugGUUGUU-GUaaUGG-----CCGUCGuGC- -5'
21972 3' -50.5 NC_004914.1 + 30697 0.66 0.945142
Target:  5'- aUCAUCGACAACGccGCUGaaaucgaagaauuGCAGCGCa -3'
miRNA:   3'- -GGUGGUUGUUGUaaUGGC-------------CGUCGUGc -5'
21972 3' -50.5 NC_004914.1 + 21485 0.66 0.940649
Target:  5'- gCgACCAGCGGCGUUuuCCGGU-GC-CGg -3'
miRNA:   3'- -GgUGGUUGUUGUAAu-GGCCGuCGuGC- -5'
21972 3' -50.5 NC_004914.1 + 31433 0.67 0.929835
Target:  5'- aCCGCCAGCuACua-ACUGGCGGUu-- -3'
miRNA:   3'- -GGUGGUUGuUGuaaUGGCCGUCGugc -5'
21972 3' -50.5 NC_004914.1 + 2790 0.67 0.929835
Target:  5'- -aGCCAGCAACAgucuucccaccUGCUGGCAGgCAa- -3'
miRNA:   3'- ggUGGUUGUUGUa----------AUGGCCGUC-GUgc -5'
21972 3' -50.5 NC_004914.1 + 6917 0.67 0.917869
Target:  5'- aCACCAACGACug-GCggcugaaugccaCGGCAGC-Ca -3'
miRNA:   3'- gGUGGUUGUUGuaaUG------------GCCGUCGuGc -5'
21972 3' -50.5 NC_004914.1 + 60899 0.67 0.917869
Target:  5'- -aGCCAAa---AUUugUGGCGGCACa -3'
miRNA:   3'- ggUGGUUguugUAAugGCCGUCGUGc -5'
21972 3' -50.5 NC_004914.1 + 55368 0.67 0.911455
Target:  5'- gCACCAaacuguGCGGCGUgauuUACCGGC-GUACc -3'
miRNA:   3'- gGUGGU------UGUUGUA----AUGGCCGuCGUGc -5'
21972 3' -50.5 NC_004914.1 + 57861 0.67 0.911455
Target:  5'- aCCGCCAGCGucCAUUccugucGCUGGCGGUu-- -3'
miRNA:   3'- -GGUGGUUGUu-GUAA------UGGCCGUCGugc -5'
21972 3' -50.5 NC_004914.1 + 19432 0.67 0.910137
Target:  5'- gCCACCGGCAaaaauauccugcACAguugcgacacCCGGCAGCcccauACGg -3'
miRNA:   3'- -GGUGGUUGU------------UGUaau-------GGCCGUCG-----UGC- -5'
21972 3' -50.5 NC_004914.1 + 20604 0.67 0.904755
Target:  5'- uUCAuUCAACAACug-GCUGGCAGCuuccCGg -3'
miRNA:   3'- -GGU-GGUUGUUGuaaUGGCCGUCGu---GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.