miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21972 3' -50.5 NC_004914.1 + 19699 0.71 0.731783
Target:  5'- aCCGCCAGCAACcaUAUCaGGUacaAGCGCa -3'
miRNA:   3'- -GGUGGUUGUUGuaAUGG-CCG---UCGUGc -5'
21972 3' -50.5 NC_004914.1 + 20091 0.69 0.858793
Target:  5'- -aGCCAGCAAUucaggaucgGUUGCCaGCuGCGCGc -3'
miRNA:   3'- ggUGGUUGUUG---------UAAUGGcCGuCGUGC- -5'
21972 3' -50.5 NC_004914.1 + 20336 0.7 0.794163
Target:  5'- aCCGCCAuGCGugAUgcugaaACCGuGCAGCAgGa -3'
miRNA:   3'- -GGUGGU-UGUugUAa-----UGGC-CGUCGUgC- -5'
21972 3' -50.5 NC_004914.1 + 20604 0.67 0.904755
Target:  5'- uUCAuUCAACAACug-GCUGGCAGCuuccCGg -3'
miRNA:   3'- -GGU-GGUUGUUGuaaUGGCCGUCGu---GC- -5'
21972 3' -50.5 NC_004914.1 + 20691 0.68 0.890513
Target:  5'- uUCGCCcACAACAggaagugacGCCGGaAGCACa -3'
miRNA:   3'- -GGUGGuUGUUGUaa-------UGGCCgUCGUGc -5'
21972 3' -50.5 NC_004914.1 + 21485 0.66 0.940649
Target:  5'- gCgACCAGCGGCGUUuuCCGGU-GC-CGg -3'
miRNA:   3'- -GgUGGUUGUUGUAAu-GGCCGuCGuGC- -5'
21972 3' -50.5 NC_004914.1 + 22557 0.71 0.742511
Target:  5'- gCCACCAaccGCGACcgUACCGGacCAGaACGc -3'
miRNA:   3'- -GGUGGU---UGUUGuaAUGGCC--GUCgUGC- -5'
21972 3' -50.5 NC_004914.1 + 24280 0.72 0.665652
Target:  5'- gCACCAAgGugacGCAaUACCGGCGGCguACGc -3'
miRNA:   3'- gGUGGUUgU----UGUaAUGGCCGUCG--UGC- -5'
21972 3' -50.5 NC_004914.1 + 26237 0.7 0.794163
Target:  5'- gCCGCCuGCuGGCGUgacaaACCGGCAuCACGg -3'
miRNA:   3'- -GGUGGuUG-UUGUAa----UGGCCGUcGUGC- -5'
21972 3' -50.5 NC_004914.1 + 26715 1.13 0.002024
Target:  5'- aCCACCAACAACAUUACCGGCAGCACGg -3'
miRNA:   3'- -GGUGGUUGUUGUAAUGGCCGUCGUGC- -5'
21972 3' -50.5 NC_004914.1 + 29013 0.71 0.731783
Target:  5'- aCACCAaaGCAcgGUUGCgGGCAGCAa- -3'
miRNA:   3'- gGUGGU--UGUugUAAUGgCCGUCGUgc -5'
21972 3' -50.5 NC_004914.1 + 30697 0.66 0.945142
Target:  5'- aUCAUCGACAACGccGCUGaaaucgaagaauuGCAGCGCa -3'
miRNA:   3'- -GGUGGUUGUUGUaaUGGC-------------CGUCGUGc -5'
21972 3' -50.5 NC_004914.1 + 31433 0.67 0.929835
Target:  5'- aCCGCCAGCuACua-ACUGGCGGUu-- -3'
miRNA:   3'- -GGUGGUUGuUGuaaUGGCCGUCGugc -5'
21972 3' -50.5 NC_004914.1 + 35926 0.72 0.699023
Target:  5'- gCCGCCAuacCggUAUUGCa-GCGGCACGa -3'
miRNA:   3'- -GGUGGUu--GuuGUAAUGgcCGUCGUGC- -5'
21972 3' -50.5 NC_004914.1 + 52556 0.69 0.841423
Target:  5'- gCGCCAGCcuuCGaaGCUGGCuGCGCGg -3'
miRNA:   3'- gGUGGUUGuu-GUaaUGGCCGuCGUGC- -5'
21972 3' -50.5 NC_004914.1 + 55368 0.67 0.911455
Target:  5'- gCACCAaacuguGCGGCGUgauuUACCGGC-GUACc -3'
miRNA:   3'- gGUGGU------UGUUGUA----AUGGCCGuCGUGc -5'
21972 3' -50.5 NC_004914.1 + 56763 0.69 0.858793
Target:  5'- gCCugCGGCAACGgcuuuCCGGCugauggucGUACGg -3'
miRNA:   3'- -GGugGUUGUUGUaau--GGCCGu-------CGUGC- -5'
21972 3' -50.5 NC_004914.1 + 57346 0.7 0.784138
Target:  5'- uUCGCCAGCAugAgcgggaUACCGGgGGCGg- -3'
miRNA:   3'- -GGUGGUUGUugUa-----AUGGCCgUCGUgc -5'
21972 3' -50.5 NC_004914.1 + 57770 0.74 0.553889
Target:  5'- aCCGCCAGCGACAggaauggacGCUGGCGGUg-- -3'
miRNA:   3'- -GGUGGUUGUUGUaa-------UGGCCGUCGugc -5'
21972 3' -50.5 NC_004914.1 + 57861 0.67 0.911455
Target:  5'- aCCGCCAGCGucCAUUccugucGCUGGCGGUu-- -3'
miRNA:   3'- -GGUGGUUGUu-GUAA------UGGCCGUCGugc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.