miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21972 3' -50.5 NC_004914.1 + 60899 0.67 0.917869
Target:  5'- -aGCCAAa---AUUugUGGCGGCACa -3'
miRNA:   3'- ggUGGUUguugUAAugGCCGUCGUGc -5'
21972 3' -50.5 NC_004914.1 + 26237 0.7 0.794163
Target:  5'- gCCGCCuGCuGGCGUgacaaACCGGCAuCACGg -3'
miRNA:   3'- -GGUGGuUG-UUGUAa----UGGCCGUcGUGC- -5'
21972 3' -50.5 NC_004914.1 + 26715 1.13 0.002024
Target:  5'- aCCACCAACAACAUUACCGGCAGCACGg -3'
miRNA:   3'- -GGUGGUUGUUGUAAUGGCCGUCGUGC- -5'
21972 3' -50.5 NC_004914.1 + 10203 0.66 0.949866
Target:  5'- cCCGCCAAUAuuuucccACGUc-CCGuCAGCACGc -3'
miRNA:   3'- -GGUGGUUGU-------UGUAauGGCcGUCGUGC- -5'
21972 3' -50.5 NC_004914.1 + 58805 0.66 0.945627
Target:  5'- aCCugCGGCAAuCAgcGCCagaacGGCAGC-CGa -3'
miRNA:   3'- -GGugGUUGUU-GUaaUGG-----CCGUCGuGC- -5'
21972 3' -50.5 NC_004914.1 + 30697 0.66 0.945142
Target:  5'- aUCAUCGACAACGccGCUGaaaucgaagaauuGCAGCGCa -3'
miRNA:   3'- -GGUGGUUGUUGUaaUGGC-------------CGUCGUGc -5'
21972 3' -50.5 NC_004914.1 + 21485 0.66 0.940649
Target:  5'- gCgACCAGCGGCGUUuuCCGGU-GC-CGg -3'
miRNA:   3'- -GgUGGUUGUUGUAAu-GGCCGuCGuGC- -5'
21972 3' -50.5 NC_004914.1 + 31433 0.67 0.929835
Target:  5'- aCCGCCAGCuACua-ACUGGCGGUu-- -3'
miRNA:   3'- -GGUGGUUGuUGuaaUGGCCGUCGugc -5'
21972 3' -50.5 NC_004914.1 + 2790 0.67 0.929835
Target:  5'- -aGCCAGCAACAgucuucccaccUGCUGGCAGgCAa- -3'
miRNA:   3'- ggUGGUUGUUGUa----------AUGGCCGUC-GUgc -5'
21972 3' -50.5 NC_004914.1 + 11929 0.69 0.858793
Target:  5'- gUCGCCAgcGCGACAUUACCGuuuGCAUc -3'
miRNA:   3'- -GGUGGU--UGUUGUAAUGGCcguCGUGc -5'
21972 3' -50.5 NC_004914.1 + 19537 0.68 0.875177
Target:  5'- aUCACUGACAGCcUUACCGGUuGC-Cu -3'
miRNA:   3'- -GGUGGUUGUUGuAAUGGCCGuCGuGc -5'
21972 3' -50.5 NC_004914.1 + 62145 0.68 0.882979
Target:  5'- aUCuCUGGCGGCGUUGauucuuucCCGGuCAGCACGa -3'
miRNA:   3'- -GGuGGUUGUUGUAAU--------GGCC-GUCGUGC- -5'
21972 3' -50.5 NC_004914.1 + 55368 0.67 0.911455
Target:  5'- gCACCAaacuguGCGGCGUgauuUACCGGC-GUACc -3'
miRNA:   3'- gGUGGU------UGUUGUA----AUGGCCGuCGUGc -5'
21972 3' -50.5 NC_004914.1 + 6296 0.68 0.865469
Target:  5'- cCCACCAcgguauaacGCAGCAgaacauucagggUGCCGGUuGCAgCGg -3'
miRNA:   3'- -GGUGGU---------UGUUGUa-----------AUGGCCGuCGU-GC- -5'
21972 3' -50.5 NC_004914.1 + 57861 0.67 0.911455
Target:  5'- aCCGCCAGCGucCAUUccugucGCUGGCGGUu-- -3'
miRNA:   3'- -GGUGGUUGUu-GUAA------UGGCCGUCGugc -5'
21972 3' -50.5 NC_004914.1 + 11633 0.68 0.882979
Target:  5'- uUACCGGCAAac---CCGGCGGCAa- -3'
miRNA:   3'- gGUGGUUGUUguaauGGCCGUCGUgc -5'
21972 3' -50.5 NC_004914.1 + 20091 0.69 0.858793
Target:  5'- -aGCCAGCAAUucaggaucgGUUGCCaGCuGCGCGc -3'
miRNA:   3'- ggUGGUUGUUG---------UAAUGGcCGuCGUGC- -5'
21972 3' -50.5 NC_004914.1 + 57346 0.7 0.784138
Target:  5'- uUCGCCAGCAugAgcgggaUACCGGgGGCGg- -3'
miRNA:   3'- -GGUGGUUGUugUa-----AUGGCCgUCGUgc -5'
21972 3' -50.5 NC_004914.1 + 19432 0.67 0.910137
Target:  5'- gCCACCGGCAaaaauauccugcACAguugcgacacCCGGCAGCcccauACGg -3'
miRNA:   3'- -GGUGGUUGU------------UGUaau-------GGCCGUCG-----UGC- -5'
21972 3' -50.5 NC_004914.1 + 20604 0.67 0.904755
Target:  5'- uUCAuUCAACAACug-GCUGGCAGCuuccCGg -3'
miRNA:   3'- -GGU-GGUUGUUGuaaUGGCCGUCGu---GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.