Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22028 | 3' | -50.6 | NC_004927.1 | + | 73966 | 0.66 | 0.947633 |
Target: 5'- --aCCGcGAGcGCGACGGAacagcucgccgcAGUUGCgGCg -3' miRNA: 3'- gaaGGU-CUC-CGUUGCCU------------UCAACGaUG- -5' |
|||||||
22028 | 3' | -50.6 | NC_004927.1 | + | 31911 | 0.66 | 0.947633 |
Target: 5'- --cCCugAGGGGCGAuuCGGggGcUGUUACa -3' miRNA: 3'- gaaGG--UCUCCGUU--GCCuuCaACGAUG- -5' |
|||||||
22028 | 3' | -50.6 | NC_004927.1 | + | 75547 | 0.66 | 0.937615 |
Target: 5'- uUUCCAGucgGGGUcggAugGGGAGgggucgGCUACu -3' miRNA: 3'- gAAGGUC---UCCG---UugCCUUCaa----CGAUG- -5' |
|||||||
22028 | 3' | -50.6 | NC_004927.1 | + | 26564 | 0.67 | 0.932175 |
Target: 5'- -gUCCGGGGugguaGCGGCGGAGGUggGUcgGCa -3' miRNA: 3'- gaAGGUCUC-----CGUUGCCUUCAa-CGa-UG- -5' |
|||||||
22028 | 3' | -50.6 | NC_004927.1 | + | 53965 | 0.68 | 0.900654 |
Target: 5'- gUUCCAGcGGgGACGGAGGUU-CaACa -3' miRNA: 3'- gAAGGUCuCCgUUGCCUUCAAcGaUG- -5' |
|||||||
22028 | 3' | -50.6 | NC_004927.1 | + | 50334 | 0.68 | 0.886061 |
Target: 5'- -aUCCgcuGGAGGCGGCGGAgcaGGUgGCa-- -3' miRNA: 3'- gaAGG---UCUCCGUUGCCU---UCAaCGaug -5' |
|||||||
22028 | 3' | -50.6 | NC_004927.1 | + | 7778 | 1.11 | 0.002753 |
Target: 5'- gCUUCCAGAGGCAACGGAAGUUGCUACa -3' miRNA: 3'- -GAAGGUCUCCGUUGCCUUCAACGAUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home