miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22056 5' -51.4 NC_004927.1 + 45556 0.66 0.950312
Target:  5'- gUGACGGCucccgCGACC---AGCAGGu -3'
miRNA:   3'- gACUGCCGcaaa-GCUGGcuuUCGUCU- -5'
22056 5' -51.4 NC_004927.1 + 66183 0.68 0.891995
Target:  5'- uCUGuucacuCGGCua-UCGACCGAcucGGGCAGGa -3'
miRNA:   3'- -GACu-----GCCGcaaAGCUGGCU---UUCGUCU- -5'
22056 5' -51.4 NC_004927.1 + 72127 0.72 0.705724
Target:  5'- -aGACGGaCGUUUCG-CUGuucGAGCAGGa -3'
miRNA:   3'- gaCUGCC-GCAAAGCuGGCu--UUCGUCU- -5'
22056 5' -51.4 NC_004927.1 + 57554 0.72 0.694917
Target:  5'- uUGACGGCc---CGACCGA--GCAGAa -3'
miRNA:   3'- gACUGCCGcaaaGCUGGCUuuCGUCU- -5'
22056 5' -51.4 NC_004927.1 + 31225 1.1 0.003463
Target:  5'- gCUGACGGCGUUUCGACCGAAAGCAGAg -3'
miRNA:   3'- -GACUGCCGCAAAGCUGGCUUUCGUCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.