miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22145 5' -54.6 NC_004927.1 + 46678 0.66 0.857409
Target:  5'- uUCAACUUCGA-GGaGUCGAAccGCCaGCAc -3'
miRNA:   3'- -GGUUGGAGCUaCC-CAGCUU--CGGgUGU- -5'
22145 5' -54.6 NC_004927.1 + 40539 0.66 0.849187
Target:  5'- uUCGGCCUCaacauGGUCGAAGacuaCCACGa -3'
miRNA:   3'- -GGUUGGAGcuac-CCAGCUUCg---GGUGU- -5'
22145 5' -54.6 NC_004927.1 + 36475 0.68 0.743341
Target:  5'- aCAACCUCGAUGcguccguucgucacGGuUCGAccacGGCCCGa- -3'
miRNA:   3'- gGUUGGAGCUAC--------------CC-AGCU----UCGGGUgu -5'
22145 5' -54.6 NC_004927.1 + 14578 0.69 0.704981
Target:  5'- aCGGCgCUCG-UGGGUCGccAGCCgACGu -3'
miRNA:   3'- gGUUG-GAGCuACCCAGCu-UCGGgUGU- -5'
22145 5' -54.6 NC_004927.1 + 35837 0.69 0.673172
Target:  5'- cCCAcggaaGCCg----GGGUCGAugaAGCCCGCAu -3'
miRNA:   3'- -GGU-----UGGagcuaCCCAGCU---UCGGGUGU- -5'
22145 5' -54.6 NC_004927.1 + 32520 0.7 0.641029
Target:  5'- -uGACCgUCGA--GGUCGAugaAGCCCACGu -3'
miRNA:   3'- ggUUGG-AGCUacCCAGCU---UCGGGUGU- -5'
22145 5' -54.6 NC_004927.1 + 67950 0.7 0.598104
Target:  5'- aCGGCa-CGAUGGGUCGucggcucgaugAAGCCUACGc -3'
miRNA:   3'- gGUUGgaGCUACCCAGC-----------UUCGGGUGU- -5'
22145 5' -54.6 NC_004927.1 + 68619 0.71 0.534689
Target:  5'- aCCGACCUCGAUGaGaUgGAGGCUgACGa -3'
miRNA:   3'- -GGUUGGAGCUAC-CcAgCUUCGGgUGU- -5'
22145 5' -54.6 NC_004927.1 + 15337 0.73 0.425844
Target:  5'- cCCAAUcguaCUUGGUGaGGUCGggGCCgACGu -3'
miRNA:   3'- -GGUUG----GAGCUAC-CCAGCuuCGGgUGU- -5'
22145 5' -54.6 NC_004927.1 + 69285 0.74 0.407483
Target:  5'- -uGACCUCGAUGGGUucaacgaguaCGggGUgCGCGa -3'
miRNA:   3'- ggUUGGAGCUACCCA----------GCuuCGgGUGU- -5'
22145 5' -54.6 NC_004927.1 + 57573 0.76 0.308336
Target:  5'- uUCAACgUUGAUGGGUCGGuugacGGCCCGa- -3'
miRNA:   3'- -GGUUGgAGCUACCCAGCU-----UCGGGUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.