Results 1 - 20 of 32 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2217 | 3' | -49.5 | NC_001405.1 | + | 67 | 0.68 | 0.835237 |
Target: 5'- --gUGGCgCGGGGCGUGGGAAcgGgGCg -3' miRNA: 3'- gaaACUGgGCCUUGCGCCUUU--UgUGg -5' |
|||||||
2217 | 3' | -49.5 | NC_001405.1 | + | 361 | 0.68 | 0.844558 |
Target: 5'- aCUUUGACCguuuACGUGGAGAcuCGCCc -3' miRNA: 3'- -GAAACUGGgccuUGCGCCUUUu-GUGG- -5' |
|||||||
2217 | 3' | -49.5 | NC_001405.1 | + | 465 | 1.14 | 0.001325 |
Target: 5'- aCUUUGACCCGGAACGCGGAAAACACCu -3' miRNA: 3'- -GAAACUGGGCCUUGCGCCUUUUGUGG- -5' |
|||||||
2217 | 3' | -49.5 | NC_001405.1 | + | 3734 | 0.67 | 0.876781 |
Target: 5'- -cUUGACCUacgagaccgugucuGGAACGCcguuGGAGACugCa -3' miRNA: 3'- gaAACUGGG--------------CCUUGCGc---CUUUUGugG- -5' |
|||||||
2217 | 3' | -49.5 | NC_001405.1 | + | 3921 | 0.71 | 0.643221 |
Target: 5'- uCUUUGACCCGGGAacuuaauguCGUuucucagcagcuguuGGAucuGCGCCa -3' miRNA: 3'- -GAAACUGGGCCUU---------GCG---------------CCUuu-UGUGG- -5' |
|||||||
2217 | 3' | -49.5 | NC_001405.1 | + | 5315 | 0.67 | 0.870972 |
Target: 5'- --aUGACCCuGGccCGUcuGGAcGAGCACCg -3' miRNA: 3'- gaaACUGGG-CCuuGCG--CCU-UUUGUGG- -5' |
|||||||
2217 | 3' | -49.5 | NC_001405.1 | + | 5383 | 0.67 | 0.869286 |
Target: 5'- ----aGCCCGGAGCGCaccccuuCACCg -3' miRNA: 3'- gaaacUGGGCCUUGCGccuuuu-GUGG- -5' |
|||||||
2217 | 3' | -49.5 | NC_001405.1 | + | 5470 | 0.66 | 0.897861 |
Target: 5'- --gUGGCCCuuGGCGCGcagcuugcccuuggaGGAGGCGCCg -3' miRNA: 3'- gaaACUGGGccUUGCGC---------------CUUUUGUGG- -5' |
|||||||
2217 | 3' | -49.5 | NC_001405.1 | + | 6021 | 0.67 | 0.853628 |
Target: 5'- ----cACCCGGucACGUGGccuACACCu -3' miRNA: 3'- gaaacUGGGCCu-UGCGCCuuuUGUGG- -5' |
|||||||
2217 | 3' | -49.5 | NC_001405.1 | + | 8950 | 0.7 | 0.741957 |
Target: 5'- ---cGAgCCGG-ACGCGGAGAucuCCa -3' miRNA: 3'- gaaaCUgGGCCuUGCGCCUUUuguGG- -5' |
|||||||
2217 | 3' | -49.5 | NC_001405.1 | + | 9245 | 0.67 | 0.887198 |
Target: 5'- ---aGGCCaUGGAGCGCcuugaggccuuGGggGAUAUCa -3' miRNA: 3'- gaaaCUGG-GCCUUGCG-----------CCuuUUGUGG- -5' |
|||||||
2217 | 3' | -49.5 | NC_001405.1 | + | 9501 | 0.68 | 0.815883 |
Target: 5'- ---cGGCCguucucgcgGGGGCGCaguuGGAAGACGCCg -3' miRNA: 3'- gaaaCUGGg--------CCUUGCG----CCUUUUGUGG- -5' |
|||||||
2217 | 3' | -49.5 | NC_001405.1 | + | 9706 | 0.66 | 0.894874 |
Target: 5'- ---cGAUCCGGucGAUGCGGAcu-CGCUc -3' miRNA: 3'- gaaaCUGGGCC--UUGCGCCUuuuGUGG- -5' |
|||||||
2217 | 3' | -49.5 | NC_001405.1 | + | 11226 | 0.69 | 0.795658 |
Target: 5'- ---gGGCCUGG--CGCGGcuaGGAGCGCCc -3' miRNA: 3'- gaaaCUGGGCCuuGCGCC---UUUUGUGG- -5' |
|||||||
2217 | 3' | -49.5 | NC_001405.1 | + | 11232 | 0.72 | 0.591852 |
Target: 5'- ---gGGCCCGGcgcCGCGGggGuucguaauCACCa -3' miRNA: 3'- gaaaCUGGGCCuu-GCGCCuuUu-------GUGG- -5' |
|||||||
2217 | 3' | -49.5 | NC_001405.1 | + | 11432 | 0.66 | 0.916086 |
Target: 5'- aCUUUGAgCCCGacGCGCGGAccgGGAUuaguCCc -3' miRNA: 3'- -GAAACU-GGGCcuUGCGCCU---UUUGu---GG- -5' |
|||||||
2217 | 3' | -49.5 | NC_001405.1 | + | 12109 | 0.66 | 0.90225 |
Target: 5'- aCUUUGACgCGG-GCGCuGAccuGCGCUg -3' miRNA: 3'- -GAAACUGgGCCuUGCGcCUuu-UGUGG- -5' |
|||||||
2217 | 3' | -49.5 | NC_001405.1 | + | 12174 | 0.67 | 0.853628 |
Target: 5'- ---gGACCUGGGcugGCGGu-GGCACCc -3' miRNA: 3'- gaaaCUGGGCCUug-CGCCuuUUGUGG- -5' |
|||||||
2217 | 3' | -49.5 | NC_001405.1 | + | 12313 | 0.72 | 0.591852 |
Target: 5'- ---gGACCCGGcggUGCGGGcgGCGCUg -3' miRNA: 3'- gaaaCUGGGCCuu-GCGCCUuuUGUGG- -5' |
|||||||
2217 | 3' | -49.5 | NC_001405.1 | + | 13961 | 0.7 | 0.71837 |
Target: 5'- cCUUUGACgaCGGGugggcggGCGCGGGccGGGCACa -3' miRNA: 3'- -GAAACUGg-GCCU-------UGCGCCU--UUUGUGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home