miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2217 3' -49.5 NC_001405.1 + 35871 0.68 0.835237
Target:  5'- --gUGGCgCGGGGCGUGGGAAcgGgGCg -3'
miRNA:   3'- gaaACUGgGCCUUGCGCCUUU--UgUGg -5'
2217 3' -49.5 NC_001405.1 + 33661 0.7 0.708124
Target:  5'- uUUUGGCCagcugguuuaGGAugGUGGuggauGGCGCCa -3'
miRNA:   3'- gAAACUGGg---------CCUugCGCCuu---UUGUGG- -5'
2217 3' -49.5 NC_001405.1 + 32665 0.68 0.825675
Target:  5'- --aUGGuCCUGGGAaaGUGGAAAauACACCa -3'
miRNA:   3'- gaaACU-GGGCCUUg-CGCCUUU--UGUGG- -5'
2217 3' -49.5 NC_001405.1 + 27989 0.67 0.887198
Target:  5'- ------aCCGGAGcCGCGGGcaAAGCACUu -3'
miRNA:   3'- gaaacugGGCCUU-GCGCCU--UUUGUGG- -5'
2217 3' -49.5 NC_001405.1 + 27357 0.71 0.638545
Target:  5'- -gUUGACCCGGGauaucAUGUGGGGucccGCGCUc -3'
miRNA:   3'- gaAACUGGGCCU-----UGCGCCUUu---UGUGG- -5'
2217 3' -49.5 NC_001405.1 + 26582 0.66 0.894874
Target:  5'- ----cGCUCGuGGCGCGGGcacaaGAACGCCa -3'
miRNA:   3'- gaaacUGGGCcUUGCGCCU-----UUUGUGG- -5'
2217 3' -49.5 NC_001405.1 + 25728 0.66 0.909322
Target:  5'- --gUGACCCcaaAGCgGCGGAGGGCAUUc -3'
miRNA:   3'- gaaACUGGGcc-UUG-CGCCUUUUGUGG- -5'
2217 3' -49.5 NC_001405.1 + 25522 0.66 0.90225
Target:  5'- ---cGGCCaCGGAGCGCucguuGAAgGCCg -3'
miRNA:   3'- gaaaCUGG-GCCUUGCGccu--UUUgUGG- -5'
2217 3' -49.5 NC_001405.1 + 25134 0.71 0.685126
Target:  5'- --cUGACCCGGAgaugcaGCGCaagcuagaGGAAAcguugcacuACACCu -3'
miRNA:   3'- gaaACUGGGCCU------UGCG--------CCUUU---------UGUGG- -5'
2217 3' -49.5 NC_001405.1 + 23433 0.67 0.887198
Target:  5'- ---aGACCUGGcuaAACGaGGA--GCACCg -3'
miRNA:   3'- gaaaCUGGGCC---UUGCgCCUuuUGUGG- -5'
2217 3' -49.5 NC_001405.1 + 22821 0.68 0.815883
Target:  5'- ---gGACCUGG-ACGCGGAucuGAUcuCCg -3'
miRNA:   3'- gaaaCUGGGCCuUGCGCCUu--UUGu-GG- -5'
2217 3' -49.5 NC_001405.1 + 18965 0.66 0.909322
Target:  5'- ---cGuCUCGGuGGCGCGGGcaaacuGCACCa -3'
miRNA:   3'- gaaaCuGGGCC-UUGCGCCUuu----UGUGG- -5'
2217 3' -49.5 NC_001405.1 + 13961 0.7 0.71837
Target:  5'- cCUUUGACgaCGGGugggcggGCGCGGGccGGGCACa -3'
miRNA:   3'- -GAAACUGg-GCCU-------UGCGCCU--UUUGUGg -5'
2217 3' -49.5 NC_001405.1 + 12313 0.72 0.591852
Target:  5'- ---gGACCCGGcggUGCGGGcgGCGCUg -3'
miRNA:   3'- gaaaCUGGGCCuu-GCGCCUuuUGUGG- -5'
2217 3' -49.5 NC_001405.1 + 12174 0.67 0.853628
Target:  5'- ---gGACCUGGGcugGCGGu-GGCACCc -3'
miRNA:   3'- gaaaCUGGGCCUug-CGCCuuUUGUGG- -5'
2217 3' -49.5 NC_001405.1 + 12109 0.66 0.90225
Target:  5'- aCUUUGACgCGG-GCGCuGAccuGCGCUg -3'
miRNA:   3'- -GAAACUGgGCCuUGCGcCUuu-UGUGG- -5'
2217 3' -49.5 NC_001405.1 + 11432 0.66 0.916086
Target:  5'- aCUUUGAgCCCGacGCGCGGAccgGGAUuaguCCc -3'
miRNA:   3'- -GAAACU-GGGCcuUGCGCCU---UUUGu---GG- -5'
2217 3' -49.5 NC_001405.1 + 11232 0.72 0.591852
Target:  5'- ---gGGCCCGGcgcCGCGGggGuucguaauCACCa -3'
miRNA:   3'- gaaaCUGGGCCuu-GCGCCuuUu-------GUGG- -5'
2217 3' -49.5 NC_001405.1 + 11226 0.69 0.795658
Target:  5'- ---gGGCCUGG--CGCGGcuaGGAGCGCCc -3'
miRNA:   3'- gaaaCUGGGCCuuGCGCC---UUUUGUGG- -5'
2217 3' -49.5 NC_001405.1 + 9706 0.66 0.894874
Target:  5'- ---cGAUCCGGucGAUGCGGAcu-CGCUc -3'
miRNA:   3'- gaaaCUGGGCC--UUGCGCCUuuuGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.