miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22179 5' -51.4 NC_004927.1 + 35721 0.71 0.729607
Target:  5'- -cGGUGUGGGCaagaGCGAAG---UCACCc -3'
miRNA:   3'- uaCUACACUCGg---CGCUUCaagAGUGG- -5'
22179 5' -51.4 NC_004927.1 + 25799 0.7 0.750807
Target:  5'- aGUGAaccUGAGCCGCGAGG-UCU-ACCu -3'
miRNA:   3'- -UACUac-ACUCGGCGCUUCaAGAgUGG- -5'
22179 5' -51.4 NC_004927.1 + 43236 0.7 0.761227
Target:  5'- ---uUGUaGAGCCGCGAAGUaUUCcCCg -3'
miRNA:   3'- uacuACA-CUCGGCGCUUCAaGAGuGG- -5'
22179 5' -51.4 NC_004927.1 + 46767 0.69 0.829731
Target:  5'- uUGAaguugGUGAGCCGaUGGAGcUUCcCGCCg -3'
miRNA:   3'- uACUa----CACUCGGC-GCUUC-AAGaGUGG- -5'
22179 5' -51.4 NC_004927.1 + 45334 0.69 0.829731
Target:  5'- -cGGUGUGucCCGagugcuGGUUCUCGCCg -3'
miRNA:   3'- uaCUACACucGGCgcu---UCAAGAGUGG- -5'
22179 5' -51.4 NC_004927.1 + 2267 0.68 0.847546
Target:  5'- gAUGAUGUGAaccUCGCGggGcgcUUCgCACCa -3'
miRNA:   3'- -UACUACACUc--GGCGCuuC---AAGaGUGG- -5'
22179 5' -51.4 NC_004927.1 + 26065 0.68 0.856111
Target:  5'- -cGAUGUGuucuGCCGCG---UUCUgACCg -3'
miRNA:   3'- uaCUACACu---CGGCGCuucAAGAgUGG- -5'
22179 5' -51.4 NC_004927.1 + 47479 0.67 0.915423
Target:  5'- -cGAUacGUGGGCCGauGAGUUUgaaCACCa -3'
miRNA:   3'- uaCUA--CACUCGGCgcUUCAAGa--GUGG- -5'
22179 5' -51.4 NC_004927.1 + 73040 0.65 0.94689
Target:  5'- cUGGUauUGAGCCaGCGAGGUaucugauagaggacUCUCGCa -3'
miRNA:   3'- uACUAc-ACUCGG-CGCUUCA--------------AGAGUGg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.