miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22185 5' -58.5 NC_004927.1 + 53653 0.67 0.581062
Target:  5'- cCGUUCAGGGcGUGGagGGAGUcACCu -3'
miRNA:   3'- aGCAGGUCUCcCGCCagCCUCAcUGG- -5'
22185 5' -58.5 NC_004927.1 + 37844 0.68 0.560532
Target:  5'- gUCGUCUaugucGGAGGGCuGGUCGGcuuucGACa -3'
miRNA:   3'- -AGCAGG-----UCUCCCG-CCAGCCuca--CUGg -5'
22185 5' -58.5 NC_004927.1 + 32772 0.68 0.560532
Target:  5'- cCGgugCgAGAGaGGCGGUCGGcGuUGACa -3'
miRNA:   3'- aGCa--GgUCUC-CCGCCAGCCuC-ACUGg -5'
22185 5' -58.5 NC_004927.1 + 75844 0.7 0.452497
Target:  5'- aCGggCAGGGGGCGGggGGAGaGACg -3'
miRNA:   3'- aGCagGUCUCCCGCCagCCUCaCUGg -5'
22185 5' -58.5 NC_004927.1 + 327 0.7 0.452497
Target:  5'- aCGggCAGGGGGCGGggGGAGaGACg -3'
miRNA:   3'- aGCagGUCUCCCGCCagCCUCaCUGg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.