Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22233 | 3' | -50.1 | NC_005045.1 | + | 26582 | 0.68 | 0.805836 |
Target: 5'- cAUCGcaUUCCguGGcGACGCcgauAUCCACg -3' miRNA: 3'- -UAGC--AAGGguCCaUUGCGuu--UAGGUG- -5' |
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22233 | 3' | -50.1 | NC_005045.1 | + | 22520 | 0.69 | 0.752572 |
Target: 5'- -aCGUg-CCAGGUGGCGCGGaagccGUCCGu -3' miRNA: 3'- uaGCAagGGUCCAUUGCGUU-----UAGGUg -5' |
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22233 | 3' | -50.1 | NC_005045.1 | + | 20270 | 0.7 | 0.6958 |
Target: 5'- gGUCagUCCCAGGUGGCuGCu-GUCCAg -3' miRNA: 3'- -UAGcaAGGGUCCAUUG-CGuuUAGGUg -5' |
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22233 | 3' | -50.1 | NC_005045.1 | + | 18784 | 0.67 | 0.835404 |
Target: 5'- aGUCGUUCCaGGGUcGCgGCGGcgCCAg -3' miRNA: 3'- -UAGCAAGGgUCCAuUG-CGUUuaGGUg -5' |
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22233 | 3' | -50.1 | NC_005045.1 | + | 5549 | 0.67 | 0.835404 |
Target: 5'- -cCGUgcUCCCAGGUGACccCGGAgaugcgCCGCg -3' miRNA: 3'- uaGCA--AGGGUCCAUUGc-GUUUa-----GGUG- -5' |
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22233 | 3' | -50.1 | NC_005045.1 | + | 861 | 1.07 | 0.002893 |
Target: 5'- uAUCGUUCCCAGGUAACGCAAAUCCACc -3' miRNA: 3'- -UAGCAAGGGUCCAUUGCGUUUAGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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