miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22233 5' -61.6 NC_005045.1 + 7502 0.66 0.312477
Target:  5'- uAGCAguauGCCACCCAGCgguCAGGAagguuCUugCAg -3'
miRNA:   3'- cUCGU----CGGUGGGUCG---GUCCU-----GGugGU- -5'
22233 5' -61.6 NC_005045.1 + 32182 0.66 0.312477
Target:  5'- cAGCAGCCAUgCCAGCac-GACCgaGCCGc -3'
miRNA:   3'- cUCGUCGGUG-GGUCGgucCUGG--UGGU- -5'
22233 5' -61.6 NC_005045.1 + 29992 0.66 0.312477
Target:  5'- aGGCGGCCaacgGCUCaAGCCugacGGAUCGCCu -3'
miRNA:   3'- cUCGUCGG----UGGG-UCGGu---CCUGGUGGu -5'
22233 5' -61.6 NC_005045.1 + 28809 0.66 0.304886
Target:  5'- aGAcCGGCCA-CCAGCgGGGACCguuGCCc -3'
miRNA:   3'- -CUcGUCGGUgGGUCGgUCCUGG---UGGu -5'
22233 5' -61.6 NC_005045.1 + 23253 0.66 0.28725
Target:  5'- cAGCAGCaggcuccgguccaGCCCGGUCagguGGGugCGCCGc -3'
miRNA:   3'- cUCGUCGg------------UGGGUCGG----UCCugGUGGU- -5'
22233 5' -61.6 NC_005045.1 + 9898 0.66 0.282968
Target:  5'- -uGCAGguacgCACCCAGgCGcGGGCCGCCu -3'
miRNA:   3'- cuCGUCg----GUGGGUCgGU-CCUGGUGGu -5'
22233 5' -61.6 NC_005045.1 + 34442 0.66 0.282968
Target:  5'- cGGGcCAGCgGCCUGaCCAGcGCCACCAu -3'
miRNA:   3'- -CUC-GUCGgUGGGUcGGUCcUGGUGGU- -5'
22233 5' -61.6 NC_005045.1 + 40586 0.66 0.282968
Target:  5'- aGGGCAGCCGCCagGGCUgcgccgcgcaGGGGCUugUu -3'
miRNA:   3'- -CUCGUCGGUGGg-UCGG----------UCCUGGugGu -5'
22233 5' -61.6 NC_005045.1 + 27666 0.66 0.275944
Target:  5'- uGAaCAGCCugCCAGCCcgugAGGGUCugCAa -3'
miRNA:   3'- -CUcGUCGGugGGUCGG----UCCUGGugGU- -5'
22233 5' -61.6 NC_005045.1 + 29980 0.66 0.275944
Target:  5'- aGGGCGuugauGUCcCCCGcuuCCAGGGCCGCCAu -3'
miRNA:   3'- -CUCGU-----CGGuGGGUc--GGUCCUGGUGGU- -5'
22233 5' -61.6 NC_005045.1 + 9052 0.67 0.26906
Target:  5'- -cGCuGGCCACCCuuGaCguGGGCCAUCAu -3'
miRNA:   3'- cuCG-UCGGUGGGu-C-GguCCUGGUGGU- -5'
22233 5' -61.6 NC_005045.1 + 21004 0.67 0.26906
Target:  5'- cAGCuccuguacuGCCAgCCAGCaCAGGcCCAUCAg -3'
miRNA:   3'- cUCGu--------CGGUgGGUCG-GUCCuGGUGGU- -5'
22233 5' -61.6 NC_005045.1 + 18836 0.67 0.26906
Target:  5'- cAGCuccGCCACCUgGGCCAGGACaagauGCCc -3'
miRNA:   3'- cUCGu--CGGUGGG-UCGGUCCUGg----UGGu -5'
22233 5' -61.6 NC_005045.1 + 14129 0.67 0.26906
Target:  5'- cGGCGGUCGcaucuuCCCGGCgGGcACCGCCAu -3'
miRNA:   3'- cUCGUCGGU------GGGUCGgUCcUGGUGGU- -5'
22233 5' -61.6 NC_005045.1 + 41508 0.67 0.255709
Target:  5'- cAGCAGCCACUgcccugggCGGCgAGGGcggcgcuaccCCACCGg -3'
miRNA:   3'- cUCGUCGGUGG--------GUCGgUCCU----------GGUGGU- -5'
22233 5' -61.6 NC_005045.1 + 36331 0.67 0.24924
Target:  5'- -cGCAgauucGCCgGCCCaAGCCGGugcuGACCACCAu -3'
miRNA:   3'- cuCGU-----CGG-UGGG-UCGGUC----CUGGUGGU- -5'
22233 5' -61.6 NC_005045.1 + 42215 0.68 0.231242
Target:  5'- aGGGCAgggaagcccucGCCACCCGGCgaagccggaagcuccCAGGAggcuaggcaguggcCCACCAg -3'
miRNA:   3'- -CUCGU-----------CGGUGGGUCG---------------GUCCU--------------GGUGGU- -5'
22233 5' -61.6 NC_005045.1 + 152 0.68 0.231242
Target:  5'- aGGGCAgggaagcccucGCCACCCGGCgaagccggaagcuccCAGGAggcuaggcaguggcCCACCAg -3'
miRNA:   3'- -CUCGU-----------CGGUGGGUCG---------------GUCCU--------------GGUGGU- -5'
22233 5' -61.6 NC_005045.1 + 30829 0.68 0.230641
Target:  5'- cGGCuuguGCUGCUCGGCCAGGACgGuuCCGa -3'
miRNA:   3'- cUCGu---CGGUGGGUCGGUCCUGgU--GGU- -5'
22233 5' -61.6 NC_005045.1 + 20207 0.68 0.230641
Target:  5'- cAGCAGCCACCUGGgacuGACCGCCc -3'
miRNA:   3'- cUCGUCGGUGGGUCggucCUGGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.