Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22233 | 5' | -61.6 | NC_005045.1 | + | 38939 | 0.69 | 0.181776 |
Target: 5'- -uGCAucgggaucaccGCCGCCCu-CCAGGGCUACCGg -3' miRNA: 3'- cuCGU-----------CGGUGGGucGGUCCUGGUGGU- -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 1176 | 0.69 | 0.191776 |
Target: 5'- ---uGGCCACUCAGCaaaAGGGCCuauGCCAg -3' miRNA: 3'- cucgUCGGUGGGUCGg--UCCUGG---UGGU- -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 30829 | 0.68 | 0.230641 |
Target: 5'- cGGCuuguGCUGCUCGGCCAGGACgGuuCCGa -3' miRNA: 3'- cUCGu---CGGUGGGUCGGUCCUGgU--GGU- -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 23849 | 0.68 | 0.230641 |
Target: 5'- cGGCAGCCugCU--UCAGGACgGCCu -3' miRNA: 3'- cUCGUCGGugGGucGGUCCUGgUGGu -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 20207 | 0.68 | 0.230641 |
Target: 5'- cAGCAGCCACCUGGgacuGACCGCCc -3' miRNA: 3'- cUCGUCGGUGGGUCggucCUGGUGGu -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 152 | 0.68 | 0.231242 |
Target: 5'- aGGGCAgggaagcccucGCCACCCGGCgaagccggaagcuccCAGGAggcuaggcaguggcCCACCAg -3' miRNA: 3'- -CUCGU-----------CGGUGGGUCG---------------GUCCU--------------GGUGGU- -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 42215 | 0.68 | 0.231242 |
Target: 5'- aGGGCAgggaagcccucGCCACCCGGCgaagccggaagcuccCAGGAggcuaggcaguggcCCACCAg -3' miRNA: 3'- -CUCGU-----------CGGUGGGUCG---------------GUCCU--------------GGUGGU- -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 36331 | 0.67 | 0.24924 |
Target: 5'- -cGCAgauucGCCgGCCCaAGCCGGugcuGACCACCAu -3' miRNA: 3'- cuCGU-----CGG-UGGG-UCGGUC----CUGGUGGU- -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 41508 | 0.67 | 0.255709 |
Target: 5'- cAGCAGCCACUgcccugggCGGCgAGGGcggcgcuaccCCACCGg -3' miRNA: 3'- cUCGUCGGUGG--------GUCGgUCCU----------GGUGGU- -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 9052 | 0.67 | 0.26906 |
Target: 5'- -cGCuGGCCACCCuuGaCguGGGCCAUCAu -3' miRNA: 3'- cuCG-UCGGUGGGu-C-GguCCUGGUGGU- -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 21004 | 0.67 | 0.26906 |
Target: 5'- cAGCuccuguacuGCCAgCCAGCaCAGGcCCAUCAg -3' miRNA: 3'- cUCGu--------CGGUgGGUCG-GUCCuGGUGGU- -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 14129 | 0.67 | 0.26906 |
Target: 5'- cGGCGGUCGcaucuuCCCGGCgGGcACCGCCAu -3' miRNA: 3'- cUCGUCGGU------GGGUCGgUCcUGGUGGU- -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 18836 | 0.67 | 0.26906 |
Target: 5'- cAGCuccGCCACCUgGGCCAGGACaagauGCCc -3' miRNA: 3'- cUCGu--CGGUGGG-UCGGUCCUGg----UGGu -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 27666 | 0.66 | 0.275944 |
Target: 5'- uGAaCAGCCugCCAGCCcgugAGGGUCugCAa -3' miRNA: 3'- -CUcGUCGGugGGUCGG----UCCUGGugGU- -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 29980 | 0.66 | 0.275944 |
Target: 5'- aGGGCGuugauGUCcCCCGcuuCCAGGGCCGCCAu -3' miRNA: 3'- -CUCGU-----CGGuGGGUc--GGUCCUGGUGGU- -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 34442 | 0.66 | 0.282968 |
Target: 5'- cGGGcCAGCgGCCUGaCCAGcGCCACCAu -3' miRNA: 3'- -CUC-GUCGgUGGGUcGGUCcUGGUGGU- -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 9898 | 0.66 | 0.282968 |
Target: 5'- -uGCAGguacgCACCCAGgCGcGGGCCGCCu -3' miRNA: 3'- cuCGUCg----GUGGGUCgGU-CCUGGUGGu -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 40586 | 0.66 | 0.282968 |
Target: 5'- aGGGCAGCCGCCagGGCUgcgccgcgcaGGGGCUugUu -3' miRNA: 3'- -CUCGUCGGUGGg-UCGG----------UCCUGGugGu -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 23253 | 0.66 | 0.28725 |
Target: 5'- cAGCAGCaggcuccgguccaGCCCGGUCagguGGGugCGCCGc -3' miRNA: 3'- cUCGUCGg------------UGGGUCGG----UCCugGUGGU- -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 28809 | 0.66 | 0.304886 |
Target: 5'- aGAcCGGCCA-CCAGCgGGGACCguuGCCc -3' miRNA: 3'- -CUcGUCGGUgGGUCGgUCCUGG---UGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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