Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22233 | 5' | -61.6 | NC_005045.1 | + | 9052 | 0.67 | 0.26906 |
Target: 5'- -cGCuGGCCACCCuuGaCguGGGCCAUCAu -3' miRNA: 3'- cuCG-UCGGUGGGu-C-GguCCUGGUGGU- -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 29980 | 0.66 | 0.275944 |
Target: 5'- aGGGCGuugauGUCcCCCGcuuCCAGGGCCGCCAu -3' miRNA: 3'- -CUCGU-----CGGuGGGUc--GGUCCUGGUGGU- -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 9898 | 0.66 | 0.282968 |
Target: 5'- -uGCAGguacgCACCCAGgCGcGGGCCGCCu -3' miRNA: 3'- cuCGUCg----GUGGGUCgGU-CCUGGUGGu -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 40586 | 0.66 | 0.282968 |
Target: 5'- aGGGCAGCCGCCagGGCUgcgccgcgcaGGGGCUugUu -3' miRNA: 3'- -CUCGUCGGUGGg-UCGG----------UCCUGGugGu -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 28809 | 0.66 | 0.304886 |
Target: 5'- aGAcCGGCCA-CCAGCgGGGACCguuGCCc -3' miRNA: 3'- -CUcGUCGGUgGGUCGgUCCUGG---UGGu -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 42274 | 0.69 | 0.167643 |
Target: 5'- uGGGCAGCCACgCCAcCgCAGGGuugacacucCCGCCAg -3' miRNA: 3'- -CUCGUCGGUG-GGUcG-GUCCU---------GGUGGU- -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 6175 | 0.7 | 0.150334 |
Target: 5'- uGAGCcgacAGaCgGCCuCGGUCGGGGCCACCGu -3' miRNA: 3'- -CUCG----UC-GgUGG-GUCGGUCCUGGUGGU- -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 15228 | 0.71 | 0.138435 |
Target: 5'- -cGCAGCCACgUAGgCGGGGCCGUCGg -3' miRNA: 3'- cuCGUCGGUGgGUCgGUCCUGGUGGU- -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 42371 | 0.78 | 0.040624 |
Target: 5'- uGAGCAGCacaGCCCguacccagcAGCCAGGGCCagaGCCAg -3' miRNA: 3'- -CUCGUCGg--UGGG---------UCGGUCCUGG---UGGU- -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 308 | 0.78 | 0.040624 |
Target: 5'- uGAGCAGCacaGCCCguacccagcAGCCAGGGCCagaGCCAg -3' miRNA: 3'- -CUCGUCGg--UGGG---------UCGGUCCUGG---UGGU- -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 552 | 0.77 | 0.041824 |
Target: 5'- gGAGUGGCCagGCaaAGCCAGGACCACCc -3' miRNA: 3'- -CUCGUCGG--UGggUCGGUCCUGGUGGu -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 18768 | 0.77 | 0.046982 |
Target: 5'- cGGCGGCgccagcaucaCGCuCCGGCCAGGGCCGCCc -3' miRNA: 3'- cUCGUCG----------GUG-GGUCGGUCCUGGUGGu -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 39367 | 0.75 | 0.068387 |
Target: 5'- cGGGuCAGCCGCCCAGCCAcGGguGCCGUCGa -3' miRNA: 3'- -CUC-GUCGGUGGGUCGGU-CC--UGGUGGU- -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 17900 | 0.74 | 0.081192 |
Target: 5'- gGAcCAGCCuCCuCGGUCAGGGCCACCu -3' miRNA: 3'- -CUcGUCGGuGG-GUCGGUCCUGGUGGu -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 26933 | 0.73 | 0.088425 |
Target: 5'- cGGUAGCCucauCCCAGCgCAGGGCCAgUg -3' miRNA: 3'- cUCGUCGGu---GGGUCG-GUCCUGGUgGu -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 7239 | 0.73 | 0.096268 |
Target: 5'- uGAGCAGCaCGCCC----AGGGCCACCAg -3' miRNA: 3'- -CUCGUCG-GUGGGucggUCCUGGUGGU- -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 14825 | 0.72 | 0.101857 |
Target: 5'- -cGCcGCCACCCAGCaggaugugCAGGGCCgaGCCGg -3' miRNA: 3'- cuCGuCGGUGGGUCG--------GUCCUGG--UGGU- -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 22026 | 0.72 | 0.107751 |
Target: 5'- cAGUAGCuugauCACCUGcGUCAGGACCGCCAg -3' miRNA: 3'- cUCGUCG-----GUGGGU-CGGUCCUGGUGGU- -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 15065 | 0.72 | 0.113964 |
Target: 5'- cGGgAGCCGCCa--CCGGGGCCACCu -3' miRNA: 3'- cUCgUCGGUGGgucGGUCCUGGUGGu -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 23368 | 0.71 | 0.127406 |
Target: 5'- -uGCGGCUGCUgGGUCGGGAUgGCCAg -3' miRNA: 3'- cuCGUCGGUGGgUCGGUCCUGgUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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