miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22236 5' -57.7 NC_005045.1 + 3088 1.07 0.000478
Target:  5'- cUGCCCUGGACCAGCAGCACGUCGAAGc -3'
miRNA:   3'- -ACGGGACCUGGUCGUCGUGCAGCUUC- -5'
22236 5' -57.7 NC_005045.1 + 30764 0.76 0.104344
Target:  5'- cGUCCUGG-CCgAGCAGCACaagccgcauGUCGAAGg -3'
miRNA:   3'- aCGGGACCuGG-UCGUCGUG---------CAGCUUC- -5'
22236 5' -57.7 NC_005045.1 + 12673 0.75 0.123756
Target:  5'- cGCCCgaaccuCCAGCAGCuccCGUCGAAGg -3'
miRNA:   3'- aCGGGaccu--GGUCGUCGu--GCAGCUUC- -5'
22236 5' -57.7 NC_005045.1 + 30887 0.75 0.134675
Target:  5'- gGCCCUGGACC-GCAcGCGgGUUGAu- -3'
miRNA:   3'- aCGGGACCUGGuCGU-CGUgCAGCUuc -5'
22236 5' -57.7 NC_005045.1 + 5233 0.74 0.146474
Target:  5'- cUGCCCUGGccguguGCCAGCAGCGgG-CaGAGGa -3'
miRNA:   3'- -ACGGGACC------UGGUCGUCGUgCaG-CUUC- -5'
22236 5' -57.7 NC_005045.1 + 13422 0.74 0.150613
Target:  5'- cGCCCUGGuuCCAGUAGUugG-CGAu- -3'
miRNA:   3'- aCGGGACCu-GGUCGUCGugCaGCUuc -5'
22236 5' -57.7 NC_005045.1 + 32629 0.74 0.163672
Target:  5'- aUGCCCUGGAgCGGCuuaGGCACcUCGGc- -3'
miRNA:   3'- -ACGGGACCUgGUCG---UCGUGcAGCUuc -5'
22236 5' -57.7 NC_005045.1 + 27951 0.73 0.187707
Target:  5'- cGCCCc-GACCacGGCcucgGGCACGUCGAGGa -3'
miRNA:   3'- aCGGGacCUGG--UCG----UCGUGCAGCUUC- -5'
22236 5' -57.7 NC_005045.1 + 15058 0.72 0.198163
Target:  5'- cGCCaccgGGGCCAccuGCGGCACGUCaGGGa -3'
miRNA:   3'- aCGGga--CCUGGU---CGUCGUGCAGcUUC- -5'
22236 5' -57.7 NC_005045.1 + 5104 0.72 0.203579
Target:  5'- cGCCCUGGGCgA-UGGCuuCGUCGAGGg -3'
miRNA:   3'- aCGGGACCUGgUcGUCGu-GCAGCUUC- -5'
22236 5' -57.7 NC_005045.1 + 12795 0.72 0.214796
Target:  5'- cGCCCUGGAgguggugaugUUGGCGGCccUGUCGAAGg -3'
miRNA:   3'- aCGGGACCU----------GGUCGUCGu-GCAGCUUC- -5'
22236 5' -57.7 NC_005045.1 + 39186 0.71 0.232613
Target:  5'- cGaCCCUGGACgAGCAGgCGCGUUa--- -3'
miRNA:   3'- aC-GGGACCUGgUCGUC-GUGCAGcuuc -5'
22236 5' -57.7 NC_005045.1 + 41161 0.71 0.24517
Target:  5'- gUGCCCUGGACCAGaaccGCcCGUgGGc- -3'
miRNA:   3'- -ACGGGACCUGGUCgu--CGuGCAgCUuc -5'
22236 5' -57.7 NC_005045.1 + 23669 0.71 0.24517
Target:  5'- aGUCCUGGGuCCGGCccaggcucAGCACGUCa--- -3'
miRNA:   3'- aCGGGACCU-GGUCG--------UCGUGCAGcuuc -5'
22236 5' -57.7 NC_005045.1 + 30894 0.7 0.279025
Target:  5'- cUGCCgCUGGugCGGUcGUAC-UCGAAGg -3'
miRNA:   3'- -ACGG-GACCugGUCGuCGUGcAGCUUC- -5'
22236 5' -57.7 NC_005045.1 + 28592 0.7 0.286227
Target:  5'- gGCCCUGGAUaucgAGCGGgAgGUCGgcGa -3'
miRNA:   3'- aCGGGACCUGg---UCGUCgUgCAGCuuC- -5'
22236 5' -57.7 NC_005045.1 + 41947 0.69 0.306402
Target:  5'- gGCCUUGGcagucucgacagcaGCCAuCAGCuCGUCGAGGu -3'
miRNA:   3'- aCGGGACC--------------UGGUcGUCGuGCAGCUUC- -5'
22236 5' -57.7 NC_005045.1 + 31937 0.69 0.340744
Target:  5'- aGCgCCUGGACCccauaGGUcccaGCGUCGAAGu -3'
miRNA:   3'- aCG-GGACCUGGucg--UCG----UGCAGCUUC- -5'
22236 5' -57.7 NC_005045.1 + 37004 0.68 0.35764
Target:  5'- gGCCCUGGcAUUAGCcacaGGCGCcaCGAGGg -3'
miRNA:   3'- aCGGGACC-UGGUCG----UCGUGcaGCUUC- -5'
22236 5' -57.7 NC_005045.1 + 25944 0.68 0.375115
Target:  5'- cGCUgagCUGGcCCGGCAgGCGC-UCGAAGg -3'
miRNA:   3'- aCGG---GACCuGGUCGU-CGUGcAGCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.