miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22236 5' -57.7 NC_005045.1 + 12673 0.75 0.123756
Target:  5'- cGCCCgaaccuCCAGCAGCuccCGUCGAAGg -3'
miRNA:   3'- aCGGGaccu--GGUCGUCGu--GCAGCUUC- -5'
22236 5' -57.7 NC_005045.1 + 34507 0.66 0.501675
Target:  5'- gGCCacgaUGGcccACCGGCAGgGCGUCuucaacguuauGAAGg -3'
miRNA:   3'- aCGGg---ACC---UGGUCGUCgUGCAG-----------CUUC- -5'
22236 5' -57.7 NC_005045.1 + 41322 0.66 0.491233
Target:  5'- cGCCCUGGACCuauGCAaCGCccUGAAu -3'
miRNA:   3'- aCGGGACCUGGu--CGUcGUGcaGCUUc -5'
22236 5' -57.7 NC_005045.1 + 8832 0.66 0.489157
Target:  5'- cGCCCUGGACCcggaagagguucGCAagauGUACGcCGAGa -3'
miRNA:   3'- aCGGGACCUGGu-----------CGU----CGUGCaGCUUc -5'
22236 5' -57.7 NC_005045.1 + 34852 0.66 0.480893
Target:  5'- gGCCCUucgagugcuCCAGCAGUACGg-GAAGg -3'
miRNA:   3'- aCGGGAccu------GGUCGUCGUGCagCUUC- -5'
22236 5' -57.7 NC_005045.1 + 34218 0.66 0.480893
Target:  5'- gGCUgaUGGagaacuacGCCGGCAGUAUGUCGGGc -3'
miRNA:   3'- aCGGg-ACC--------UGGUCGUCGUGCAGCUUc -5'
22236 5' -57.7 NC_005045.1 + 16774 0.66 0.47066
Target:  5'- cGCUCUGGA--AGCAGaACGUCGGc- -3'
miRNA:   3'- aCGGGACCUggUCGUCgUGCAGCUuc -5'
22236 5' -57.7 NC_005045.1 + 7377 0.66 0.47066
Target:  5'- cGUCCUGGgauGCCAG-AGCAUGagcCGggGg -3'
miRNA:   3'- aCGGGACC---UGGUCgUCGUGCa--GCuuC- -5'
22236 5' -57.7 NC_005045.1 + 39663 0.66 0.464573
Target:  5'- aUGCCCUGGG-CGGCAcGCuuggcccguacauccACGUCGuGAGc -3'
miRNA:   3'- -ACGGGACCUgGUCGU-CG---------------UGCAGC-UUC- -5'
22236 5' -57.7 NC_005045.1 + 41075 0.67 0.43089
Target:  5'- gGCCCUGGaggugcguuauGCCAccuuGCAGCgccACGUCaaGGAGg -3'
miRNA:   3'- aCGGGACC-----------UGGU----CGUCG---UGCAG--CUUC- -5'
22236 5' -57.7 NC_005045.1 + 28592 0.7 0.286227
Target:  5'- gGCCCUGGAUaucgAGCGGgAgGUCGgcGa -3'
miRNA:   3'- aCGGGACCUGg---UCGUCgUgCAGCuuC- -5'
22236 5' -57.7 NC_005045.1 + 41161 0.71 0.24517
Target:  5'- gUGCCCUGGACCAGaaccGCcCGUgGGc- -3'
miRNA:   3'- -ACGGGACCUGGUCgu--CGuGCAgCUuc -5'
22236 5' -57.7 NC_005045.1 + 23669 0.71 0.24517
Target:  5'- aGUCCUGGGuCCGGCccaggcucAGCACGUCa--- -3'
miRNA:   3'- aCGGGACCU-GGUCG--------UCGUGCAGcuuc -5'
22236 5' -57.7 NC_005045.1 + 39186 0.71 0.232613
Target:  5'- cGaCCCUGGACgAGCAGgCGCGUUa--- -3'
miRNA:   3'- aC-GGGACCUGgUCGUC-GUGCAGcuuc -5'
22236 5' -57.7 NC_005045.1 + 12795 0.72 0.214796
Target:  5'- cGCCCUGGAgguggugaugUUGGCGGCccUGUCGAAGg -3'
miRNA:   3'- aCGGGACCU----------GGUCGUCGu-GCAGCUUC- -5'
22236 5' -57.7 NC_005045.1 + 5233 0.74 0.146474
Target:  5'- cUGCCCUGGccguguGCCAGCAGCGgG-CaGAGGa -3'
miRNA:   3'- -ACGGGACC------UGGUCGUCGUgCaG-CUUC- -5'
22236 5' -57.7 NC_005045.1 + 30887 0.75 0.134675
Target:  5'- gGCCCUGGACC-GCAcGCGgGUUGAu- -3'
miRNA:   3'- aCGGGACCUGGuCGU-CGUgCAGCUuc -5'
22236 5' -57.7 NC_005045.1 + 30764 0.76 0.104344
Target:  5'- cGUCCUGG-CCgAGCAGCACaagccgcauGUCGAAGg -3'
miRNA:   3'- aCGGGACCuGG-UCGUCGUG---------CAGCUUC- -5'
22236 5' -57.7 NC_005045.1 + 22338 0.68 0.384067
Target:  5'- cGcCCCUGGcgagcACUAcggucGCGGcCACGUCGAGGa -3'
miRNA:   3'- aC-GGGACC-----UGGU-----CGUC-GUGCAGCUUC- -5'
22236 5' -57.7 NC_005045.1 + 34472 0.66 0.491233
Target:  5'- gGCCgagCUGGugCucacGCGGCACGUUGccGg -3'
miRNA:   3'- aCGG---GACCugGu---CGUCGUGCAGCuuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.