Results 1 - 20 of 34 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22236 | 5' | -57.7 | NC_005045.1 | + | 32629 | 0.74 | 0.163672 |
Target: 5'- aUGCCCUGGAgCGGCuuaGGCACcUCGGc- -3' miRNA: 3'- -ACGGGACCUgGUCG---UCGUGcAGCUuc -5' |
|||||||
22236 | 5' | -57.7 | NC_005045.1 | + | 3088 | 1.07 | 0.000478 |
Target: 5'- cUGCCCUGGACCAGCAGCACGUCGAAGc -3' miRNA: 3'- -ACGGGACCUGGUCGUCGUGCAGCUUC- -5' |
|||||||
22236 | 5' | -57.7 | NC_005045.1 | + | 25944 | 0.68 | 0.375115 |
Target: 5'- cGCUgagCUGGcCCGGCAgGCGC-UCGAAGg -3' miRNA: 3'- aCGG---GACCuGGUCGU-CGUGcAGCUUC- -5' |
|||||||
22236 | 5' | -57.7 | NC_005045.1 | + | 37004 | 0.68 | 0.35764 |
Target: 5'- gGCCCUGGcAUUAGCcacaGGCGCcaCGAGGg -3' miRNA: 3'- aCGGGACC-UGGUCG----UCGUGcaGCUUC- -5' |
|||||||
22236 | 5' | -57.7 | NC_005045.1 | + | 41947 | 0.69 | 0.306402 |
Target: 5'- gGCCUUGGcagucucgacagcaGCCAuCAGCuCGUCGAGGu -3' miRNA: 3'- aCGGGACC--------------UGGUcGUCGuGCAGCUUC- -5' |
|||||||
22236 | 5' | -57.7 | NC_005045.1 | + | 30894 | 0.7 | 0.279025 |
Target: 5'- cUGCCgCUGGugCGGUcGUAC-UCGAAGg -3' miRNA: 3'- -ACGG-GACCugGUCGuCGUGcAGCUUC- -5' |
|||||||
22236 | 5' | -57.7 | NC_005045.1 | + | 30683 | 0.67 | 0.44954 |
Target: 5'- cGCCCaccuggaUGGugCGGUugcGCACGUUGgcGg -3' miRNA: 3'- aCGGG-------ACCugGUCGu--CGUGCAGCuuC- -5' |
|||||||
22236 | 5' | -57.7 | NC_005045.1 | + | 36022 | 0.67 | 0.44954 |
Target: 5'- aGCCCaGGGCaCGGCgcagcgccucauuGGCGgCGUCGAGu -3' miRNA: 3'- aCGGGaCCUG-GUCG-------------UCGU-GCAGCUUc -5' |
|||||||
22236 | 5' | -57.7 | NC_005045.1 | + | 31937 | 0.69 | 0.340744 |
Target: 5'- aGCgCCUGGACCccauaGGUcccaGCGUCGAAGu -3' miRNA: 3'- aCG-GGACCUGGucg--UCG----UGCAGCUUC- -5' |
|||||||
22236 | 5' | -57.7 | NC_005045.1 | + | 5104 | 0.72 | 0.203579 |
Target: 5'- cGCCCUGGGCgA-UGGCuuCGUCGAGGg -3' miRNA: 3'- aCGGGACCUGgUcGUCGu-GCAGCUUC- -5' |
|||||||
22236 | 5' | -57.7 | NC_005045.1 | + | 27951 | 0.73 | 0.187707 |
Target: 5'- cGCCCc-GACCacGGCcucgGGCACGUCGAGGa -3' miRNA: 3'- aCGGGacCUGG--UCG----UCGUGCAGCUUC- -5' |
|||||||
22236 | 5' | -57.7 | NC_005045.1 | + | 34472 | 0.66 | 0.491233 |
Target: 5'- gGCCgagCUGGugCucacGCGGCACGUUGccGg -3' miRNA: 3'- aCGG---GACCugGu---CGUCGUGCAGCuuC- -5' |
|||||||
22236 | 5' | -57.7 | NC_005045.1 | + | 15058 | 0.72 | 0.198163 |
Target: 5'- cGCCaccgGGGCCAccuGCGGCACGUCaGGGa -3' miRNA: 3'- aCGGga--CCUGGU---CGUCGUGCAGcUUC- -5' |
|||||||
22236 | 5' | -57.7 | NC_005045.1 | + | 22848 | 0.68 | 0.393159 |
Target: 5'- aGCCCUGGAgUAGCGcaucaucCACcUCGGAGa -3' miRNA: 3'- aCGGGACCUgGUCGUc------GUGcAGCUUC- -5' |
|||||||
22236 | 5' | -57.7 | NC_005045.1 | + | 13422 | 0.74 | 0.150613 |
Target: 5'- cGCCCUGGuuCCAGUAGUugG-CGAu- -3' miRNA: 3'- aCGGGACCu-GGUCGUCGugCaGCUuc -5' |
|||||||
22236 | 5' | -57.7 | NC_005045.1 | + | 34218 | 0.66 | 0.480893 |
Target: 5'- gGCUgaUGGagaacuacGCCGGCAGUAUGUCGGGc -3' miRNA: 3'- aCGGg-ACC--------UGGUCGUCGUGCAGCUUc -5' |
|||||||
22236 | 5' | -57.7 | NC_005045.1 | + | 16774 | 0.66 | 0.47066 |
Target: 5'- cGCUCUGGA--AGCAGaACGUCGGc- -3' miRNA: 3'- aCGGGACCUggUCGUCgUGCAGCUuc -5' |
|||||||
22236 | 5' | -57.7 | NC_005045.1 | + | 7377 | 0.66 | 0.47066 |
Target: 5'- cGUCCUGGgauGCCAG-AGCAUGagcCGggGg -3' miRNA: 3'- aCGGGACC---UGGUCgUCGUGCa--GCuuC- -5' |
|||||||
22236 | 5' | -57.7 | NC_005045.1 | + | 39663 | 0.66 | 0.464573 |
Target: 5'- aUGCCCUGGG-CGGCAcGCuuggcccguacauccACGUCGuGAGc -3' miRNA: 3'- -ACGGGACCUgGUCGU-CG---------------UGCAGC-UUC- -5' |
|||||||
22236 | 5' | -57.7 | NC_005045.1 | + | 23669 | 0.71 | 0.24517 |
Target: 5'- aGUCCUGGGuCCGGCccaggcucAGCACGUCa--- -3' miRNA: 3'- aCGGGACCU-GGUCG--------UCGUGCAGcuuc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home