miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22236 5' -57.7 NC_005045.1 + 37004 0.68 0.35764
Target:  5'- gGCCCUGGcAUUAGCcacaGGCGCcaCGAGGg -3'
miRNA:   3'- aCGGGACC-UGGUCG----UCGUGcaGCUUC- -5'
22236 5' -57.7 NC_005045.1 + 25944 0.68 0.375115
Target:  5'- cGCUgagCUGGcCCGGCAgGCGC-UCGAAGg -3'
miRNA:   3'- aCGG---GACCuGGUCGU-CGUGcAGCUUC- -5'
22236 5' -57.7 NC_005045.1 + 22848 0.68 0.393159
Target:  5'- aGCCCUGGAgUAGCGcaucaucCACcUCGGAGa -3'
miRNA:   3'- aCGGGACCUgGUCGUc------GUGcAGCUUC- -5'
22236 5' -57.7 NC_005045.1 + 36022 0.67 0.44954
Target:  5'- aGCCCaGGGCaCGGCgcagcgccucauuGGCGgCGUCGAGu -3'
miRNA:   3'- aCGGGaCCUG-GUCG-------------UCGU-GCAGCUUc -5'
22236 5' -57.7 NC_005045.1 + 30683 0.67 0.44954
Target:  5'- cGCCCaccuggaUGGugCGGUugcGCACGUUGgcGg -3'
miRNA:   3'- aCGGG-------ACCugGUCGu--CGUGCAGCuuC- -5'
22236 5' -57.7 NC_005045.1 + 41947 0.69 0.306402
Target:  5'- gGCCUUGGcagucucgacagcaGCCAuCAGCuCGUCGAGGu -3'
miRNA:   3'- aCGGGACC--------------UGGUcGUCGuGCAGCUUC- -5'
22236 5' -57.7 NC_005045.1 + 30894 0.7 0.279025
Target:  5'- cUGCCgCUGGugCGGUcGUAC-UCGAAGg -3'
miRNA:   3'- -ACGG-GACCugGUCGuCGUGcAGCUUC- -5'
22236 5' -57.7 NC_005045.1 + 5104 0.72 0.203579
Target:  5'- cGCCCUGGGCgA-UGGCuuCGUCGAGGg -3'
miRNA:   3'- aCGGGACCUGgUcGUCGu-GCAGCUUC- -5'
22236 5' -57.7 NC_005045.1 + 15058 0.72 0.198163
Target:  5'- cGCCaccgGGGCCAccuGCGGCACGUCaGGGa -3'
miRNA:   3'- aCGGga--CCUGGU---CGUCGUGCAGcUUC- -5'
22236 5' -57.7 NC_005045.1 + 27951 0.73 0.187707
Target:  5'- cGCCCc-GACCacGGCcucgGGCACGUCGAGGa -3'
miRNA:   3'- aCGGGacCUGG--UCG----UCGUGCAGCUUC- -5'
22236 5' -57.7 NC_005045.1 + 32629 0.74 0.163672
Target:  5'- aUGCCCUGGAgCGGCuuaGGCACcUCGGc- -3'
miRNA:   3'- -ACGGGACCUgGUCG---UCGUGcAGCUuc -5'
22236 5' -57.7 NC_005045.1 + 13422 0.74 0.150613
Target:  5'- cGCCCUGGuuCCAGUAGUugG-CGAu- -3'
miRNA:   3'- aCGGGACCu-GGUCGUCGugCaGCUuc -5'
22236 5' -57.7 NC_005045.1 + 3088 1.07 0.000478
Target:  5'- cUGCCCUGGACCAGCAGCACGUCGAAGc -3'
miRNA:   3'- -ACGGGACCUGGUCGUCGUGCAGCUUC- -5'
22236 5' -57.7 NC_005045.1 + 34472 0.66 0.491233
Target:  5'- gGCCgagCUGGugCucacGCGGCACGUUGccGg -3'
miRNA:   3'- aCGG---GACCugGu---CGUCGUGCAGCuuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.