miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22243 3' -59 NC_005045.1 + 16757 0.66 0.443823
Target:  5'- cCugGCCGaCCACg-UUGCCCAcGG-CGc -3'
miRNA:   3'- uGugCGGC-GGUGgaAACGGGU-CCaGC- -5'
22243 3' -59 NC_005045.1 + 11495 0.66 0.443823
Target:  5'- cCACGCCGUCgagguugaACCagcggUUGUUCGGGUCu -3'
miRNA:   3'- uGUGCGGCGG--------UGGa----AACGGGUCCAGc -5'
22243 3' -59 NC_005045.1 + 38058 0.66 0.434145
Target:  5'- gGCGCuGCCcucugGCCGCCgaucGUCUAGGUCu -3'
miRNA:   3'- -UGUG-CGG-----CGGUGGaaa-CGGGUCCAGc -5'
22243 3' -59 NC_005045.1 + 8695 0.66 0.434145
Target:  5'- -gGCGCUGCCACCagcaccgagGCCCcGG-CGu -3'
miRNA:   3'- ugUGCGGCGGUGGaaa------CGGGuCCaGC- -5'
22243 3' -59 NC_005045.1 + 14316 0.66 0.432224
Target:  5'- uCACGUCGCC-CCacagugcgaaGCCCAGG-CGg -3'
miRNA:   3'- uGUGCGGCGGuGGaaa-------CGGGUCCaGC- -5'
22243 3' -59 NC_005045.1 + 17815 0.66 0.428397
Target:  5'- uGCAaugGCCGCCGCCgaggugGCCCugaccgaggaggcuGGUCc -3'
miRNA:   3'- -UGUg--CGGCGGUGGaaa---CGGGu-------------CCAGc -5'
22243 3' -59 NC_005045.1 + 5806 0.66 0.415162
Target:  5'- aGCugGCCGCUACCcgcGCCUcuAGaUCGg -3'
miRNA:   3'- -UGugCGGCGGUGGaaaCGGG--UCcAGC- -5'
22243 3' -59 NC_005045.1 + 40407 0.66 0.415162
Target:  5'- cCACGCCGgUgacggcgaggguGCCUUUGCCCGccUCGg -3'
miRNA:   3'- uGUGCGGCgG------------UGGAAACGGGUccAGC- -5'
22243 3' -59 NC_005045.1 + 19412 0.66 0.405864
Target:  5'- aGCGCGCCcUCGCCgaagGCCCggagaacuauccGGGUCu -3'
miRNA:   3'- -UGUGCGGcGGUGGaaa-CGGG------------UCCAGc -5'
22243 3' -59 NC_005045.1 + 30601 0.66 0.404941
Target:  5'- --uCGCCGCCGCCaacgUGCgcaaccgcaccauCCAGGUgGg -3'
miRNA:   3'- uguGCGGCGGUGGaa--ACG-------------GGUCCAgC- -5'
22243 3' -59 NC_005045.1 + 32683 0.67 0.387666
Target:  5'- gUACGCUGCC-CCag-GCCCuccaGGGUCu -3'
miRNA:   3'- uGUGCGGCGGuGGaaaCGGG----UCCAGc -5'
22243 3' -59 NC_005045.1 + 39698 0.67 0.387666
Target:  5'- aGCuCGUCGCCGCCgucGCCggcaGGGUCc -3'
miRNA:   3'- -UGuGCGGCGGUGGaaaCGGg---UCCAGc -5'
22243 3' -59 NC_005045.1 + 2461 0.67 0.370013
Target:  5'- gGCA-GCCGCCGCaa-UGCgCuGGUCGa -3'
miRNA:   3'- -UGUgCGGCGGUGgaaACGgGuCCAGC- -5'
22243 3' -59 NC_005045.1 + 2766 0.67 0.370013
Target:  5'- cCAUGCCGacgauCACC-UUGCCCuuGGUCu -3'
miRNA:   3'- uGUGCGGCg----GUGGaAACGGGu-CCAGc -5'
22243 3' -59 NC_005045.1 + 28156 0.68 0.344581
Target:  5'- aGCGCugugguGCCGCUGCCg--GCaCGGGUCGa -3'
miRNA:   3'- -UGUG------CGGCGGUGGaaaCGgGUCCAGC- -5'
22243 3' -59 NC_005045.1 + 29956 0.68 0.342108
Target:  5'- -aGgGCCGCCAugaugcCCUgcaugcguugggcaUUGCCCAGGcCGg -3'
miRNA:   3'- ugUgCGGCGGU------GGA--------------AACGGGUCCaGC- -5'
22243 3' -59 NC_005045.1 + 41583 0.68 0.32043
Target:  5'- -aGCGCCGCCcUCgccGCCCAGGg-- -3'
miRNA:   3'- ugUGCGGCGGuGGaaaCGGGUCCagc -5'
22243 3' -59 NC_005045.1 + 37389 0.69 0.29757
Target:  5'- -aGCGCCGCCGCCgg-GaCCGGGa-- -3'
miRNA:   3'- ugUGCGGCGGUGGaaaCgGGUCCagc -5'
22243 3' -59 NC_005045.1 + 25840 0.69 0.288064
Target:  5'- -uGCGCCGCCACCggcugaagcuacgcUUgGCCUGGGUg- -3'
miRNA:   3'- ugUGCGGCGGUGG--------------AAaCGGGUCCAgc -5'
22243 3' -59 NC_005045.1 + 17922 0.69 0.283045
Target:  5'- cCGCGCCGCCACCcugGaaCAGG-CGg -3'
miRNA:   3'- uGUGCGGCGGUGGaaaCggGUCCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.