Results 61 - 72 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22245 | 3' | -62.3 | NC_005045.1 | + | 25966 | 0.72 | 0.107784 |
Target: 5'- -uGGCccaccuGCUGCauaccgACCAGCccugGCCGAGGCCg -3' miRNA: 3'- cuCCG------CGACGg-----UGGUCG----UGGCUCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 28516 | 0.72 | 0.099159 |
Target: 5'- aGGGGaUGCUaGCCGgCggaAGCGCCGAGGCUc -3' miRNA: 3'- -CUCC-GCGA-CGGUgG---UCGUGGCUCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 27338 | 0.72 | 0.099159 |
Target: 5'- -cGGCaGgUGCCGCCcuGGUAUCGAGGUCg -3' miRNA: 3'- cuCCG-CgACGGUGG--UCGUGGCUCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 8594 | 0.73 | 0.090425 |
Target: 5'- -uGGUGCUGCCggcguacaugaaggGCCuccaCGCCGGGGCCu -3' miRNA: 3'- cuCCGCGACGG--------------UGGuc--GUGGCUCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 16438 | 0.74 | 0.068797 |
Target: 5'- -uGGCgGCUGCCuGCCGGCGCUu-GGCCa -3' miRNA: 3'- cuCCG-CGACGG-UGGUCGUGGcuCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 26744 | 0.75 | 0.063181 |
Target: 5'- -cGGCGCUgucaugGCCACCGGCuccACCaAGGCCc -3' miRNA: 3'- cuCCGCGA------CGGUGGUCG---UGGcUCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 32802 | 0.75 | 0.063181 |
Target: 5'- -cGGUGCUGCCgcgaaccuggACCagGGUAUCGAGGCCc -3' miRNA: 3'- cuCCGCGACGG----------UGG--UCGUGGCUCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 5743 | 0.75 | 0.059686 |
Target: 5'- aGAGGCGCggguaGCgGCCAGCuuguGCC-AGGCCg -3' miRNA: 3'- -CUCCGCGa----CGgUGGUCG----UGGcUCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 26107 | 0.76 | 0.054792 |
Target: 5'- -cGGUGCUgcGCCACCAGCAUCGcaaugcugcGGCCa -3' miRNA: 3'- cuCCGCGA--CGGUGGUCGUGGCu--------CCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 41117 | 0.77 | 0.047488 |
Target: 5'- gGAGGuCGCUGCCAggaccaacacCCAGCGCCagGAGGUg -3' miRNA: 3'- -CUCC-GCGACGGU----------GGUCGUGG--CUCCGg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 4128 | 0.77 | 0.04484 |
Target: 5'- cAGGCGcCUGCCAgCAG-GCCGAGGCa -3' miRNA: 3'- cUCCGC-GACGGUgGUCgUGGCUCCGg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 8698 | 1.09 | 0.000121 |
Target: 5'- gGAGGCGCUGCCACCAGCACCGAGGCCc -3' miRNA: 3'- -CUCCGCGACGGUGGUCGUGGCUCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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