Results 41 - 60 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22245 | 3' | -62.3 | NC_005045.1 | + | 6737 | 0.69 | 0.180687 |
Target: 5'- aGAGGaaccaCUGCCACCAGUucucggcguuGCuCGGGGCUu -3' miRNA: 3'- -CUCCgc---GACGGUGGUCG----------UG-GCUCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 15971 | 0.69 | 0.180687 |
Target: 5'- cGAGGCGCUGCU-CCAGaaGCgGAGGg- -3' miRNA: 3'- -CUCCGCGACGGuGGUCg-UGgCUCCgg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 33950 | 0.69 | 0.180687 |
Target: 5'- cGGGCGCgggacaggGCUACCGGCAuCCGcuccgaguucauGGGCg -3' miRNA: 3'- cUCCGCGa-------CGGUGGUCGU-GGC------------UCCGg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 28557 | 0.69 | 0.175946 |
Target: 5'- -uGGCGCUugGCU-CCAcCugCGAGGCCa -3' miRNA: 3'- cuCCGCGA--CGGuGGUcGugGCUCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 34508 | 0.69 | 0.171317 |
Target: 5'- -uGGCGCUggucagGCCGCUGGC-CCGcugugcaacgGGGCCg -3' miRNA: 3'- cuCCGCGA------CGGUGGUCGuGGC----------UCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 30366 | 0.69 | 0.171317 |
Target: 5'- -uGGCGCUGaacuCGCgCAGgGCCuGGGCCg -3' miRNA: 3'- cuCCGCGACg---GUG-GUCgUGGcUCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 3290 | 0.69 | 0.171317 |
Target: 5'- cGGGUGcCUGCCucAUCAGCACCcAGGUa -3' miRNA: 3'- cUCCGC-GACGG--UGGUCGUGGcUCCGg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 14952 | 0.69 | 0.171317 |
Target: 5'- uGAGGCaCUGCCugcgggacaGCCGGUACagcaGGGGCg -3' miRNA: 3'- -CUCCGcGACGG---------UGGUCGUGg---CUCCGg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 5041 | 0.69 | 0.166796 |
Target: 5'- -uGGCGCUgGCCuucacguCCAGCAgCuuGGCCg -3' miRNA: 3'- cuCCGCGA-CGGu------GGUCGUgGcuCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 35434 | 0.69 | 0.166796 |
Target: 5'- uGGaGUGCU-CCGCCAGCccgaagACCGGGGCg -3' miRNA: 3'- cUC-CGCGAcGGUGGUCG------UGGCUCCGg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 7289 | 0.69 | 0.166796 |
Target: 5'- gGAGGUGCcagGUCauGCgGGCGCCGuaggcGGGCCg -3' miRNA: 3'- -CUCCGCGa--CGG--UGgUCGUGGC-----UCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 38060 | 0.69 | 0.161948 |
Target: 5'- cAGGCGCUGCCcuCUGGCcGCCGAucgucuaGGUCu -3' miRNA: 3'- cUCCGCGACGGu-GGUCG-UGGCU-------CCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 35955 | 0.7 | 0.153872 |
Target: 5'- uGAGGCGCUG-CGCCGuGC-CCuGGGCUu -3' miRNA: 3'- -CUCCGCGACgGUGGU-CGuGGcUCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 13149 | 0.7 | 0.151398 |
Target: 5'- --aGUGCagagGCCACCAGCcucgucauguacaagGCCGAGGaCCa -3' miRNA: 3'- cucCGCGa---CGGUGGUCG---------------UGGCUCC-GG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 16633 | 0.7 | 0.149769 |
Target: 5'- aGGGcGCGCUG-CACUGGCuggGCCGcaAGGCCg -3' miRNA: 3'- -CUC-CGCGACgGUGGUCG---UGGC--UCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 28163 | 0.7 | 0.145371 |
Target: 5'- -uGGUGCcGCUGCCGGCACgGGucgauauGGCCa -3' miRNA: 3'- cuCCGCGaCGGUGGUCGUGgCU-------CCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 8254 | 0.7 | 0.141861 |
Target: 5'- cAGGCGCUGCgcgaACUgaucaAGCugCGAGGUg -3' miRNA: 3'- cUCCGCGACGg---UGG-----UCGugGCUCCGg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 39878 | 0.7 | 0.138052 |
Target: 5'- -cGGaagaGCUGaccaacugCACCAGCGCCGAGGUUu -3' miRNA: 3'- cuCCg---CGACg-------GUGGUCGUGGCUCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 27495 | 0.71 | 0.134337 |
Target: 5'- -cGGCGgacgagaugauCUGCCACCAGUACCucuGGCa -3' miRNA: 3'- cuCCGC-----------GACGGUGGUCGUGGcu-CCGg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 746 | 0.71 | 0.134337 |
Target: 5'- uAGGCGU--CCAUCAGCGCCGcAGGUg -3' miRNA: 3'- cUCCGCGacGGUGGUCGUGGC-UCCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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