Results 41 - 60 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22245 | 3' | -62.3 | NC_005045.1 | + | 24003 | 0.68 | 0.200794 |
Target: 5'- aGGGGUuggccgGCUGCCugUacaacGGCACCGGaGCCu -3' miRNA: 3'- -CUCCG------CGACGGugG-----UCGUGGCUcCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 22624 | 0.68 | 0.206117 |
Target: 5'- cAGGCGUucauguauggUGCCaACCAGCgagacGCCGAGcGCg -3' miRNA: 3'- cUCCGCG----------ACGG-UGGUCG-----UGGCUC-CGg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 40588 | 0.68 | 0.211561 |
Target: 5'- cGAGG-GCaGCCGCCAgggcuGCGCCGcgcagGGGCUu -3' miRNA: 3'- -CUCCgCGaCGGUGGU-----CGUGGC-----UCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 30556 | 0.68 | 0.217128 |
Target: 5'- cGGGU-CUGCuCACCAGCGacaCG-GGCCg -3' miRNA: 3'- cUCCGcGACG-GUGGUCGUg--GCuCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 12497 | 0.68 | 0.217128 |
Target: 5'- aGGGCGUcGCCGCUGGUGCUGAacacgGGCg -3' miRNA: 3'- cUCCGCGaCGGUGGUCGUGGCU-----CCGg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 15071 | 0.68 | 0.217128 |
Target: 5'- -cGGCaGCgggaGCCGCC---ACCGGGGCCa -3' miRNA: 3'- cuCCG-CGa---CGGUGGucgUGGCUCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 32132 | 0.68 | 0.217128 |
Target: 5'- -uGGCuGCUGCUGgCGGCGCUG-GGCa -3' miRNA: 3'- cuCCG-CGACGGUgGUCGUGGCuCCGg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 37335 | 0.68 | 0.217128 |
Target: 5'- -uGGCGC-GCUAUCAguGCGCCGGacaauaacGGCCa -3' miRNA: 3'- cuCCGCGaCGGUGGU--CGUGGCU--------CCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 26814 | 0.68 | 0.22282 |
Target: 5'- uGGGCagaGCggGCCGCCuacGGCACCGAuugGGUCc -3' miRNA: 3'- cUCCG---CGa-CGGUGG---UCGUGGCU---CCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 11804 | 0.68 | 0.22282 |
Target: 5'- uGGGCug-GCUACCuggagcGCugCGAGGCCc -3' miRNA: 3'- cUCCGcgaCGGUGGu-----CGugGCUCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 23480 | 0.67 | 0.228052 |
Target: 5'- -cGGCGgaGCUACCGGgGCCGgcugagcGGGUg -3' miRNA: 3'- cuCCGCgaCGGUGGUCgUGGC-------UCCGg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 15861 | 0.67 | 0.228639 |
Target: 5'- cGAGGUGCUGUgGau-GCGCCGAacGCCg -3' miRNA: 3'- -CUCCGCGACGgUgguCGUGGCUc-CGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 29374 | 0.67 | 0.234586 |
Target: 5'- -cGGCcuucuGCUGCUgcGCCAGCGCCuguaGGGCa -3' miRNA: 3'- cuCCG-----CGACGG--UGGUCGUGGc---UCCGg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 42315 | 0.67 | 0.240662 |
Target: 5'- -uGGCGCUGguagcCCACCgcagGGCGCUGGGuaugaGCCg -3' miRNA: 3'- cuCCGCGAC-----GGUGG----UCGUGGCUC-----CGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 252 | 0.67 | 0.240662 |
Target: 5'- -uGGCGCUGguagcCCACCgcagGGCGCUGGGuaugaGCCg -3' miRNA: 3'- cuCCGCGAC-----GGUGG----UCGUGGCUC-----CGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 11248 | 0.67 | 0.240662 |
Target: 5'- -uGGCGCagcaUGCCAuCCAGUACCc-GGCg -3' miRNA: 3'- cuCCGCG----ACGGU-GGUCGUGGcuCCGg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 7358 | 0.67 | 0.24437 |
Target: 5'- -cGGCGCagUGCCAUUGGUACCauuccucccacaaAGGCCg -3' miRNA: 3'- cuCCGCG--ACGGUGGUCGUGGc------------UCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 41307 | 0.67 | 0.246868 |
Target: 5'- uGGGUGUUcGCacagcacaGCgGGCGCCGGGGCg -3' miRNA: 3'- cUCCGCGA-CGg-------UGgUCGUGGCUCCGg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 28462 | 0.67 | 0.253207 |
Target: 5'- -uGGcCGCUaGCUACCgcaAGCaaGCCGuGGCCu -3' miRNA: 3'- cuCC-GCGA-CGGUGG---UCG--UGGCuCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 11684 | 0.67 | 0.253207 |
Target: 5'- uGGGUGCcGCCguacuucggaGCCAGCucgUCGAGuGCCg -3' miRNA: 3'- cUCCGCGaCGG----------UGGUCGu--GGCUC-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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