miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22245 3' -62.3 NC_005045.1 + 38060 0.69 0.161948
Target:  5'- cAGGCGCUGCCcuCUGGCcGCCGAucgucuaGGUCu -3'
miRNA:   3'- cUCCGCGACGGu-GGUCG-UGGCU-------CCGG- -5'
22245 3' -62.3 NC_005045.1 + 7289 0.69 0.166796
Target:  5'- gGAGGUGCcagGUCauGCgGGCGCCGuaggcGGGCCg -3'
miRNA:   3'- -CUCCGCGa--CGG--UGgUCGUGGC-----UCCGG- -5'
22245 3' -62.3 NC_005045.1 + 35434 0.69 0.166796
Target:  5'- uGGaGUGCU-CCGCCAGCccgaagACCGGGGCg -3'
miRNA:   3'- cUC-CGCGAcGGUGGUCG------UGGCUCCGg -5'
22245 3' -62.3 NC_005045.1 + 5041 0.69 0.166796
Target:  5'- -uGGCGCUgGCCuucacguCCAGCAgCuuGGCCg -3'
miRNA:   3'- cuCCGCGA-CGGu------GGUCGUgGcuCCGG- -5'
22245 3' -62.3 NC_005045.1 + 34508 0.69 0.171317
Target:  5'- -uGGCGCUggucagGCCGCUGGC-CCGcugugcaacgGGGCCg -3'
miRNA:   3'- cuCCGCGA------CGGUGGUCGuGGC----------UCCGG- -5'
22245 3' -62.3 NC_005045.1 + 30366 0.69 0.171317
Target:  5'- -uGGCGCUGaacuCGCgCAGgGCCuGGGCCg -3'
miRNA:   3'- cuCCGCGACg---GUG-GUCgUGGcUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 3290 0.69 0.171317
Target:  5'- cGGGUGcCUGCCucAUCAGCACCcAGGUa -3'
miRNA:   3'- cUCCGC-GACGG--UGGUCGUGGcUCCGg -5'
22245 3' -62.3 NC_005045.1 + 14952 0.69 0.171317
Target:  5'- uGAGGCaCUGCCugcgggacaGCCGGUACagcaGGGGCg -3'
miRNA:   3'- -CUCCGcGACGG---------UGGUCGUGg---CUCCGg -5'
22245 3' -62.3 NC_005045.1 + 28557 0.69 0.175946
Target:  5'- -uGGCGCUugGCU-CCAcCugCGAGGCCa -3'
miRNA:   3'- cuCCGCGA--CGGuGGUcGugGCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 6737 0.69 0.180687
Target:  5'- aGAGGaaccaCUGCCACCAGUucucggcguuGCuCGGGGCUu -3'
miRNA:   3'- -CUCCgc---GACGGUGGUCG----------UG-GCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 15971 0.69 0.180687
Target:  5'- cGAGGCGCUGCU-CCAGaaGCgGAGGg- -3'
miRNA:   3'- -CUCCGCGACGGuGGUCg-UGgCUCCgg -5'
22245 3' -62.3 NC_005045.1 + 33950 0.69 0.180687
Target:  5'- cGGGCGCgggacaggGCUACCGGCAuCCGcuccgaguucauGGGCg -3'
miRNA:   3'- cUCCGCGa-------CGGUGGUCGU-GGC------------UCCGg -5'
22245 3' -62.3 NC_005045.1 + 32562 0.69 0.18554
Target:  5'- cGAGGUGCcuaaGCCGCUccagGGCAUCGccGCCa -3'
miRNA:   3'- -CUCCGCGa---CGGUGG----UCGUGGCucCGG- -5'
22245 3' -62.3 NC_005045.1 + 9884 0.69 0.190508
Target:  5'- cAGGCGCggGCCGCCu---UCGGGGUCg -3'
miRNA:   3'- cUCCGCGa-CGGUGGucguGGCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 29305 0.68 0.195592
Target:  5'- cAGGCGCUGgCGCagCAGCagaagGCCGAGGa- -3'
miRNA:   3'- cUCCGCGACgGUG--GUCG-----UGGCUCCgg -5'
22245 3' -62.3 NC_005045.1 + 4573 0.68 0.195592
Target:  5'- aAGGCGaagGCUggugcGCCAGCcuuccACCGuGGCCa -3'
miRNA:   3'- cUCCGCga-CGG-----UGGUCG-----UGGCuCCGG- -5'
22245 3' -62.3 NC_005045.1 + 10492 0.68 0.195592
Target:  5'- cGGGGUGUcGCCccGCCGGCAaucuuccaUGAGGCUg -3'
miRNA:   3'- -CUCCGCGaCGG--UGGUCGUg-------GCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 7983 0.68 0.197659
Target:  5'- uGAGGCGUgaUG-CGCCGGCuCCGgucccugcuuaucgaAGGCCa -3'
miRNA:   3'- -CUCCGCG--ACgGUGGUCGuGGC---------------UCCGG- -5'
22245 3' -62.3 NC_005045.1 + 27869 0.68 0.197659
Target:  5'- uAGGCGCcgGCCACgGGCugUagcugauacacggcaGAGGCa -3'
miRNA:   3'- cUCCGCGa-CGGUGgUCGugG---------------CUCCGg -5'
22245 3' -62.3 NC_005045.1 + 17803 0.68 0.200794
Target:  5'- uGAGGCGUucaaUGCaaugGCCGcCGCCGAGGUg -3'
miRNA:   3'- -CUCCGCG----ACGg---UGGUcGUGGCUCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.