Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22245 | 3' | -62.3 | NC_005045.1 | + | 252 | 0.67 | 0.240662 |
Target: 5'- -uGGCGCUGguagcCCACCgcagGGCGCUGGGuaugaGCCg -3' miRNA: 3'- cuCCGCGAC-----GGUGG----UCGUGGCUC-----CGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 11248 | 0.67 | 0.240662 |
Target: 5'- -uGGCGCagcaUGCCAuCCAGUACCc-GGCg -3' miRNA: 3'- cuCCGCG----ACGGU-GGUCGUGGcuCCGg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 40588 | 0.68 | 0.211561 |
Target: 5'- cGAGG-GCaGCCGCCAgggcuGCGCCGcgcagGGGCUu -3' miRNA: 3'- -CUCCgCGaCGGUGGU-----CGUGGC-----UCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 30556 | 0.68 | 0.217128 |
Target: 5'- cGGGU-CUGCuCACCAGCGacaCG-GGCCg -3' miRNA: 3'- cUCCGcGACG-GUGGUCGUg--GCuCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 10492 | 0.68 | 0.195592 |
Target: 5'- cGGGGUGUcGCCccGCCGGCAaucuuccaUGAGGCUg -3' miRNA: 3'- -CUCCGCGaCGG--UGGUCGUg-------GCUCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 12497 | 0.68 | 0.217128 |
Target: 5'- aGGGCGUcGCCGCUGGUGCUGAacacgGGCg -3' miRNA: 3'- cUCCGCGaCGGUGGUCGUGGCU-----CCGg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 24003 | 0.68 | 0.200794 |
Target: 5'- aGGGGUuggccgGCUGCCugUacaacGGCACCGGaGCCu -3' miRNA: 3'- -CUCCG------CGACGGugG-----UCGUGGCUcCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 27869 | 0.68 | 0.197659 |
Target: 5'- uAGGCGCcgGCCACgGGCugUagcugauacacggcaGAGGCa -3' miRNA: 3'- cUCCGCGa-CGGUGgUCGugG---------------CUCCGg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 15071 | 0.68 | 0.217128 |
Target: 5'- -cGGCaGCgggaGCCGCC---ACCGGGGCCa -3' miRNA: 3'- cuCCG-CGa---CGGUGGucgUGGCUCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 7983 | 0.68 | 0.197659 |
Target: 5'- uGAGGCGUgaUG-CGCCGGCuCCGgucccugcuuaucgaAGGCCa -3' miRNA: 3'- -CUCCGCG--ACgGUGGUCGuGGC---------------UCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 37335 | 0.68 | 0.217128 |
Target: 5'- -uGGCGC-GCUAUCAguGCGCCGGacaauaacGGCCa -3' miRNA: 3'- cuCCGCGaCGGUGGU--CGUGGCU--------CCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 17803 | 0.68 | 0.200794 |
Target: 5'- uGAGGCGUucaaUGCaaugGCCGcCGCCGAGGUg -3' miRNA: 3'- -CUCCGCG----ACGg---UGGUcGUGGCUCCGg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 4573 | 0.68 | 0.195592 |
Target: 5'- aAGGCGaagGCUggugcGCCAGCcuuccACCGuGGCCa -3' miRNA: 3'- cUCCGCga-CGG-----UGGUCG-----UGGCuCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 26814 | 0.68 | 0.22282 |
Target: 5'- uGGGCagaGCggGCCGCCuacGGCACCGAuugGGUCc -3' miRNA: 3'- cUCCG---CGa-CGGUGG---UCGUGGCU---CCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 11804 | 0.68 | 0.22282 |
Target: 5'- uGGGCug-GCUACCuggagcGCugCGAGGCCc -3' miRNA: 3'- cUCCGcgaCGGUGGu-----CGugGCUCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 22624 | 0.68 | 0.206117 |
Target: 5'- cAGGCGUucauguauggUGCCaACCAGCgagacGCCGAGcGCg -3' miRNA: 3'- cUCCGCG----------ACGG-UGGUCG-----UGGCUC-CGg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 32132 | 0.68 | 0.217128 |
Target: 5'- -uGGCuGCUGCUGgCGGCGCUG-GGCa -3' miRNA: 3'- cuCCG-CGACGGUgGUCGUGGCuCCGg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 29305 | 0.68 | 0.195592 |
Target: 5'- cAGGCGCUGgCGCagCAGCagaagGCCGAGGa- -3' miRNA: 3'- cUCCGCGACgGUG--GUCG-----UGGCUCCgg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 33950 | 0.69 | 0.180687 |
Target: 5'- cGGGCGCgggacaggGCUACCGGCAuCCGcuccgaguucauGGGCg -3' miRNA: 3'- cUCCGCGa-------CGGUGGUCGU-GGC------------UCCGg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 32562 | 0.69 | 0.18554 |
Target: 5'- cGAGGUGCcuaaGCCGCUccagGGCAUCGccGCCa -3' miRNA: 3'- -CUCCGCGa---CGGUGG----UCGUGGCucCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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