miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22245 3' -62.3 NC_005045.1 + 23425 0.66 0.301363
Target:  5'- -cGGUaGCU-CCGCCGGCugCGGGuGCa -3'
miRNA:   3'- cuCCG-CGAcGGUGGUCGugGCUC-CGg -5'
22245 3' -62.3 NC_005045.1 + 29526 0.66 0.266285
Target:  5'- cAGGCugaGCUGCCGggaCAGUucgucGCCGGuGGCCu -3'
miRNA:   3'- cUCCG---CGACGGUg--GUCG-----UGGCU-CCGG- -5'
22245 3' -62.3 NC_005045.1 + 13624 0.66 0.28692
Target:  5'- cAGGCGCUcGCUcauguaGCgGGCAgCGucGGCCa -3'
miRNA:   3'- cUCCGCGA-CGG------UGgUCGUgGCu-CCGG- -5'
22245 3' -62.3 NC_005045.1 + 39645 0.66 0.273027
Target:  5'- -uGGUGCccagccuccaGCCAUCAGCGCCGgcAGGUa -3'
miRNA:   3'- cuCCGCGa---------CGGUGGUCGUGGC--UCCGg -5'
22245 3' -62.3 NC_005045.1 + 37389 0.66 0.273027
Target:  5'- --aGCGCcGCCGCCGGgACCGGGauuauCCa -3'
miRNA:   3'- cucCGCGaCGGUGGUCgUGGCUCc----GG- -5'
22245 3' -62.3 NC_005045.1 + 13746 0.66 0.273027
Target:  5'- cGGGuCGCa-CCACCGGCAUUGcucuacAGGCCa -3'
miRNA:   3'- cUCC-GCGacGGUGGUCGUGGC------UCCGG- -5'
22245 3' -62.3 NC_005045.1 + 30458 0.66 0.266285
Target:  5'- -cGGCGaaaGCgACCugAGCAauaaCGAGGCCg -3'
miRNA:   3'- cuCCGCga-CGgUGG--UCGUg---GCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 18830 0.66 0.266285
Target:  5'- cAGGCGCaGCU-CCGcCACCuGGGCCa -3'
miRNA:   3'- cUCCGCGaCGGuGGUcGUGGcUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 2811 0.66 0.266285
Target:  5'- uGGGUGCaGCCuuggcgGCCAGCGCUuccAGGUCa -3'
miRNA:   3'- cUCCGCGaCGG------UGGUCGUGGc--UCCGG- -5'
22245 3' -62.3 NC_005045.1 + 30902 0.66 0.28692
Target:  5'- cGAGGagGCUGCCGCUGGUGCgGucguacucgaAGGCg -3'
miRNA:   3'- -CUCCg-CGACGGUGGUCGUGgC----------UCCGg -5'
22245 3' -62.3 NC_005045.1 + 252 0.67 0.240662
Target:  5'- -uGGCGCUGguagcCCACCgcagGGCGCUGGGuaugaGCCg -3'
miRNA:   3'- cuCCGCGAC-----GGUGG----UCGUGGCUC-----CGG- -5'
22245 3' -62.3 NC_005045.1 + 11248 0.67 0.240662
Target:  5'- -uGGCGCagcaUGCCAuCCAGUACCc-GGCg -3'
miRNA:   3'- cuCCGCG----ACGGU-GGUCGUGGcuCCGg -5'
22245 3' -62.3 NC_005045.1 + 29374 0.67 0.234586
Target:  5'- -cGGCcuucuGCUGCUgcGCCAGCGCCuguaGGGCa -3'
miRNA:   3'- cuCCG-----CGACGG--UGGUCGUGGc---UCCGg -5'
22245 3' -62.3 NC_005045.1 + 41307 0.67 0.246868
Target:  5'- uGGGUGUUcGCacagcacaGCgGGCGCCGGGGCg -3'
miRNA:   3'- cUCCGCGA-CGg-------UGgUCGUGGCUCCGg -5'
22245 3' -62.3 NC_005045.1 + 11684 0.67 0.253207
Target:  5'- uGGGUGCcGCCguacuucggaGCCAGCucgUCGAGuGCCg -3'
miRNA:   3'- cUCCGCGaCGG----------UGGUCGu--GGCUC-CGG- -5'
22245 3' -62.3 NC_005045.1 + 42315 0.67 0.240662
Target:  5'- -uGGCGCUGguagcCCACCgcagGGCGCUGGGuaugaGCCg -3'
miRNA:   3'- cuCCGCGAC-----GGUGG----UCGUGGCUC-----CGG- -5'
22245 3' -62.3 NC_005045.1 + 28462 0.67 0.253207
Target:  5'- -uGGcCGCUaGCUACCgcaAGCaaGCCGuGGCCu -3'
miRNA:   3'- cuCC-GCGA-CGGUGG---UCG--UGGCuCCGG- -5'
22245 3' -62.3 NC_005045.1 + 15861 0.67 0.228639
Target:  5'- cGAGGUGCUGUgGau-GCGCCGAacGCCg -3'
miRNA:   3'- -CUCCGCGACGgUgguCGUGGCUc-CGG- -5'
22245 3' -62.3 NC_005045.1 + 7358 0.67 0.24437
Target:  5'- -cGGCGCagUGCCAUUGGUACCauuccucccacaaAGGCCg -3'
miRNA:   3'- cuCCGCG--ACGGUGGUCGUGGc------------UCCGG- -5'
22245 3' -62.3 NC_005045.1 + 41369 0.67 0.253207
Target:  5'- aGGGCGUccugauagGCCGCuaCAGCGCgGAucaGGCCa -3'
miRNA:   3'- cUCCGCGa-------CGGUG--GUCGUGgCU---CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.