miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22245 3' -62.3 NC_005045.1 + 8698 1.09 0.000121
Target:  5'- gGAGGCGCUGCCACCAGCACCGAGGCCc -3'
miRNA:   3'- -CUCCGCGACGGUGGUCGUGGCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 4128 0.77 0.04484
Target:  5'- cAGGCGcCUGCCAgCAG-GCCGAGGCa -3'
miRNA:   3'- cUCCGC-GACGGUgGUCgUGGCUCCGg -5'
22245 3' -62.3 NC_005045.1 + 41117 0.77 0.047488
Target:  5'- gGAGGuCGCUGCCAggaccaacacCCAGCGCCagGAGGUg -3'
miRNA:   3'- -CUCC-GCGACGGU----------GGUCGUGG--CUCCGg -5'
22245 3' -62.3 NC_005045.1 + 26107 0.76 0.054792
Target:  5'- -cGGUGCUgcGCCACCAGCAUCGcaaugcugcGGCCa -3'
miRNA:   3'- cuCCGCGA--CGGUGGUCGUGGCu--------CCGG- -5'
22245 3' -62.3 NC_005045.1 + 5743 0.75 0.059686
Target:  5'- aGAGGCGCggguaGCgGCCAGCuuguGCC-AGGCCg -3'
miRNA:   3'- -CUCCGCGa----CGgUGGUCG----UGGcUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 32802 0.75 0.063181
Target:  5'- -cGGUGCUGCCgcgaaccuggACCagGGUAUCGAGGCCc -3'
miRNA:   3'- cuCCGCGACGG----------UGG--UCGUGGCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 26744 0.75 0.063181
Target:  5'- -cGGCGCUgucaugGCCACCGGCuccACCaAGGCCc -3'
miRNA:   3'- cuCCGCGA------CGGUGGUCG---UGGcUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 16438 0.74 0.068797
Target:  5'- -uGGCgGCUGCCuGCCGGCGCUu-GGCCa -3'
miRNA:   3'- cuCCG-CGACGG-UGGUCGUGGcuCCGG- -5'
22245 3' -62.3 NC_005045.1 + 8594 0.73 0.090425
Target:  5'- -uGGUGCUGCCggcguacaugaaggGCCuccaCGCCGGGGCCu -3'
miRNA:   3'- cuCCGCGACGG--------------UGGuc--GUGGCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 27338 0.72 0.099159
Target:  5'- -cGGCaGgUGCCGCCcuGGUAUCGAGGUCg -3'
miRNA:   3'- cuCCG-CgACGGUGG--UCGUGGCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 28516 0.72 0.099159
Target:  5'- aGGGGaUGCUaGCCGgCggaAGCGCCGAGGCUc -3'
miRNA:   3'- -CUCC-GCGA-CGGUgG---UCGUGGCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 25966 0.72 0.107784
Target:  5'- -uGGCccaccuGCUGCauaccgACCAGCccugGCCGAGGCCg -3'
miRNA:   3'- cuCCG------CGACGg-----UGGUCG----UGGCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 27495 0.71 0.134337
Target:  5'- -cGGCGgacgagaugauCUGCCACCAGUACCucuGGCa -3'
miRNA:   3'- cuCCGC-----------GACGGUGGUCGUGGcu-CCGg -5'
22245 3' -62.3 NC_005045.1 + 746 0.71 0.134337
Target:  5'- uAGGCGU--CCAUCAGCGCCGcAGGUg -3'
miRNA:   3'- cUCCGCGacGGUGGUCGUGGC-UCCGg -5'
22245 3' -62.3 NC_005045.1 + 39878 0.7 0.138052
Target:  5'- -cGGaagaGCUGaccaacugCACCAGCGCCGAGGUUu -3'
miRNA:   3'- cuCCg---CGACg-------GUGGUCGUGGCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 8254 0.7 0.141861
Target:  5'- cAGGCGCUGCgcgaACUgaucaAGCugCGAGGUg -3'
miRNA:   3'- cUCCGCGACGg---UGG-----UCGugGCUCCGg -5'
22245 3' -62.3 NC_005045.1 + 28163 0.7 0.145371
Target:  5'- -uGGUGCcGCUGCCGGCACgGGucgauauGGCCa -3'
miRNA:   3'- cuCCGCGaCGGUGGUCGUGgCU-------CCGG- -5'
22245 3' -62.3 NC_005045.1 + 16633 0.7 0.149769
Target:  5'- aGGGcGCGCUG-CACUGGCuggGCCGcaAGGCCg -3'
miRNA:   3'- -CUC-CGCGACgGUGGUCG---UGGC--UCCGG- -5'
22245 3' -62.3 NC_005045.1 + 13149 0.7 0.151398
Target:  5'- --aGUGCagagGCCACCAGCcucgucauguacaagGCCGAGGaCCa -3'
miRNA:   3'- cucCGCGa---CGGUGGUCG---------------UGGCUCC-GG- -5'
22245 3' -62.3 NC_005045.1 + 35955 0.7 0.153872
Target:  5'- uGAGGCGCUG-CGCCGuGC-CCuGGGCUu -3'
miRNA:   3'- -CUCCGCGACgGUGGU-CGuGGcUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.