Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22245 | 3' | -62.3 | NC_005045.1 | + | 252 | 0.67 | 0.240662 |
Target: 5'- -uGGCGCUGguagcCCACCgcagGGCGCUGGGuaugaGCCg -3' miRNA: 3'- cuCCGCGAC-----GGUGG----UCGUGGCUC-----CGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 746 | 0.71 | 0.134337 |
Target: 5'- uAGGCGU--CCAUCAGCGCCGcAGGUg -3' miRNA: 3'- cUCCGCGacGGUGGUCGUGGC-UCCGg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 2811 | 0.66 | 0.266285 |
Target: 5'- uGGGUGCaGCCuuggcgGCCAGCGCUuccAGGUCa -3' miRNA: 3'- cUCCGCGaCGG------UGGUCGUGGc--UCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 3290 | 0.69 | 0.171317 |
Target: 5'- cGGGUGcCUGCCucAUCAGCACCcAGGUa -3' miRNA: 3'- cUCCGC-GACGG--UGGUCGUGGcUCCGg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 4128 | 0.77 | 0.04484 |
Target: 5'- cAGGCGcCUGCCAgCAG-GCCGAGGCa -3' miRNA: 3'- cUCCGC-GACGGUgGUCgUGGCUCCGg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 4573 | 0.68 | 0.195592 |
Target: 5'- aAGGCGaagGCUggugcGCCAGCcuuccACCGuGGCCa -3' miRNA: 3'- cUCCGCga-CGG-----UGGUCG-----UGGCuCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 5041 | 0.69 | 0.166796 |
Target: 5'- -uGGCGCUgGCCuucacguCCAGCAgCuuGGCCg -3' miRNA: 3'- cuCCGCGA-CGGu------GGUCGUgGcuCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 5743 | 0.75 | 0.059686 |
Target: 5'- aGAGGCGCggguaGCgGCCAGCuuguGCC-AGGCCg -3' miRNA: 3'- -CUCCGCGa----CGgUGGUCG----UGGcUCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 6737 | 0.69 | 0.180687 |
Target: 5'- aGAGGaaccaCUGCCACCAGUucucggcguuGCuCGGGGCUu -3' miRNA: 3'- -CUCCgc---GACGGUGGUCG----------UG-GCUCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 7289 | 0.69 | 0.166796 |
Target: 5'- gGAGGUGCcagGUCauGCgGGCGCCGuaggcGGGCCg -3' miRNA: 3'- -CUCCGCGa--CGG--UGgUCGUGGC-----UCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 7358 | 0.67 | 0.24437 |
Target: 5'- -cGGCGCagUGCCAUUGGUACCauuccucccacaaAGGCCg -3' miRNA: 3'- cuCCGCG--ACGGUGGUCGUGGc------------UCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 7983 | 0.68 | 0.197659 |
Target: 5'- uGAGGCGUgaUG-CGCCGGCuCCGgucccugcuuaucgaAGGCCa -3' miRNA: 3'- -CUCCGCG--ACgGUGGUCGuGGC---------------UCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 8254 | 0.7 | 0.141861 |
Target: 5'- cAGGCGCUGCgcgaACUgaucaAGCugCGAGGUg -3' miRNA: 3'- cUCCGCGACGg---UGG-----UCGugGCUCCGg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 8594 | 0.73 | 0.090425 |
Target: 5'- -uGGUGCUGCCggcguacaugaaggGCCuccaCGCCGGGGCCu -3' miRNA: 3'- cuCCGCGACGG--------------UGGuc--GUGGCUCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 8698 | 1.09 | 0.000121 |
Target: 5'- gGAGGCGCUGCCACCAGCACCGAGGCCc -3' miRNA: 3'- -CUCCGCGACGGUGGUCGUGGCUCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 9884 | 0.69 | 0.190508 |
Target: 5'- cAGGCGCggGCCGCCu---UCGGGGUCg -3' miRNA: 3'- cUCCGCGa-CGGUGGucguGGCUCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 10492 | 0.68 | 0.195592 |
Target: 5'- cGGGGUGUcGCCccGCCGGCAaucuuccaUGAGGCUg -3' miRNA: 3'- -CUCCGCGaCGG--UGGUCGUg-------GCUCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 11248 | 0.67 | 0.240662 |
Target: 5'- -uGGCGCagcaUGCCAuCCAGUACCc-GGCg -3' miRNA: 3'- cuCCGCG----ACGGU-GGUCGUGGcuCCGg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 11684 | 0.67 | 0.253207 |
Target: 5'- uGGGUGCcGCCguacuucggaGCCAGCucgUCGAGuGCCg -3' miRNA: 3'- cUCCGCGaCGG----------UGGUCGu--GGCUC-CGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 11804 | 0.68 | 0.22282 |
Target: 5'- uGGGCug-GCUACCuggagcGCugCGAGGCCc -3' miRNA: 3'- cUCCGcgaCGGUGGu-----CGugGCUCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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