miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22245 3' -62.3 NC_005045.1 + 252 0.67 0.240662
Target:  5'- -uGGCGCUGguagcCCACCgcagGGCGCUGGGuaugaGCCg -3'
miRNA:   3'- cuCCGCGAC-----GGUGG----UCGUGGCUC-----CGG- -5'
22245 3' -62.3 NC_005045.1 + 746 0.71 0.134337
Target:  5'- uAGGCGU--CCAUCAGCGCCGcAGGUg -3'
miRNA:   3'- cUCCGCGacGGUGGUCGUGGC-UCCGg -5'
22245 3' -62.3 NC_005045.1 + 2811 0.66 0.266285
Target:  5'- uGGGUGCaGCCuuggcgGCCAGCGCUuccAGGUCa -3'
miRNA:   3'- cUCCGCGaCGG------UGGUCGUGGc--UCCGG- -5'
22245 3' -62.3 NC_005045.1 + 3290 0.69 0.171317
Target:  5'- cGGGUGcCUGCCucAUCAGCACCcAGGUa -3'
miRNA:   3'- cUCCGC-GACGG--UGGUCGUGGcUCCGg -5'
22245 3' -62.3 NC_005045.1 + 4128 0.77 0.04484
Target:  5'- cAGGCGcCUGCCAgCAG-GCCGAGGCa -3'
miRNA:   3'- cUCCGC-GACGGUgGUCgUGGCUCCGg -5'
22245 3' -62.3 NC_005045.1 + 4573 0.68 0.195592
Target:  5'- aAGGCGaagGCUggugcGCCAGCcuuccACCGuGGCCa -3'
miRNA:   3'- cUCCGCga-CGG-----UGGUCG-----UGGCuCCGG- -5'
22245 3' -62.3 NC_005045.1 + 5041 0.69 0.166796
Target:  5'- -uGGCGCUgGCCuucacguCCAGCAgCuuGGCCg -3'
miRNA:   3'- cuCCGCGA-CGGu------GGUCGUgGcuCCGG- -5'
22245 3' -62.3 NC_005045.1 + 5743 0.75 0.059686
Target:  5'- aGAGGCGCggguaGCgGCCAGCuuguGCC-AGGCCg -3'
miRNA:   3'- -CUCCGCGa----CGgUGGUCG----UGGcUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 6737 0.69 0.180687
Target:  5'- aGAGGaaccaCUGCCACCAGUucucggcguuGCuCGGGGCUu -3'
miRNA:   3'- -CUCCgc---GACGGUGGUCG----------UG-GCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 7289 0.69 0.166796
Target:  5'- gGAGGUGCcagGUCauGCgGGCGCCGuaggcGGGCCg -3'
miRNA:   3'- -CUCCGCGa--CGG--UGgUCGUGGC-----UCCGG- -5'
22245 3' -62.3 NC_005045.1 + 7358 0.67 0.24437
Target:  5'- -cGGCGCagUGCCAUUGGUACCauuccucccacaaAGGCCg -3'
miRNA:   3'- cuCCGCG--ACGGUGGUCGUGGc------------UCCGG- -5'
22245 3' -62.3 NC_005045.1 + 7983 0.68 0.197659
Target:  5'- uGAGGCGUgaUG-CGCCGGCuCCGgucccugcuuaucgaAGGCCa -3'
miRNA:   3'- -CUCCGCG--ACgGUGGUCGuGGC---------------UCCGG- -5'
22245 3' -62.3 NC_005045.1 + 8254 0.7 0.141861
Target:  5'- cAGGCGCUGCgcgaACUgaucaAGCugCGAGGUg -3'
miRNA:   3'- cUCCGCGACGg---UGG-----UCGugGCUCCGg -5'
22245 3' -62.3 NC_005045.1 + 8594 0.73 0.090425
Target:  5'- -uGGUGCUGCCggcguacaugaaggGCCuccaCGCCGGGGCCu -3'
miRNA:   3'- cuCCGCGACGG--------------UGGuc--GUGGCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 8698 1.09 0.000121
Target:  5'- gGAGGCGCUGCCACCAGCACCGAGGCCc -3'
miRNA:   3'- -CUCCGCGACGGUGGUCGUGGCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 9884 0.69 0.190508
Target:  5'- cAGGCGCggGCCGCCu---UCGGGGUCg -3'
miRNA:   3'- cUCCGCGa-CGGUGGucguGGCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 10492 0.68 0.195592
Target:  5'- cGGGGUGUcGCCccGCCGGCAaucuuccaUGAGGCUg -3'
miRNA:   3'- -CUCCGCGaCGG--UGGUCGUg-------GCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 11248 0.67 0.240662
Target:  5'- -uGGCGCagcaUGCCAuCCAGUACCc-GGCg -3'
miRNA:   3'- cuCCGCG----ACGGU-GGUCGUGGcuCCGg -5'
22245 3' -62.3 NC_005045.1 + 11684 0.67 0.253207
Target:  5'- uGGGUGCcGCCguacuucggaGCCAGCucgUCGAGuGCCg -3'
miRNA:   3'- cUCCGCGaCGG----------UGGUCGu--GGCUC-CGG- -5'
22245 3' -62.3 NC_005045.1 + 11804 0.68 0.22282
Target:  5'- uGGGCug-GCUACCuggagcGCugCGAGGCCc -3'
miRNA:   3'- cUCCGcgaCGGUGGu-----CGugGCUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.