miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22245 3' -62.3 NC_005045.1 + 5743 0.75 0.059686
Target:  5'- aGAGGCGCggguaGCgGCCAGCuuguGCC-AGGCCg -3'
miRNA:   3'- -CUCCGCGa----CGgUGGUCG----UGGcUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 22624 0.68 0.206117
Target:  5'- cAGGCGUucauguauggUGCCaACCAGCgagacGCCGAGcGCg -3'
miRNA:   3'- cUCCGCG----------ACGG-UGGUCG-----UGGCUC-CGg -5'
22245 3' -62.3 NC_005045.1 + 17803 0.68 0.200794
Target:  5'- uGAGGCGUucaaUGCaaugGCCGcCGCCGAGGUg -3'
miRNA:   3'- -CUCCGCG----ACGg---UGGUcGUGGCUCCGg -5'
22245 3' -62.3 NC_005045.1 + 7983 0.68 0.197659
Target:  5'- uGAGGCGUgaUG-CGCCGGCuCCGgucccugcuuaucgaAGGCCa -3'
miRNA:   3'- -CUCCGCG--ACgGUGGUCGuGGC---------------UCCGG- -5'
22245 3' -62.3 NC_005045.1 + 29305 0.68 0.195592
Target:  5'- cAGGCGCUGgCGCagCAGCagaagGCCGAGGa- -3'
miRNA:   3'- cUCCGCGACgGUG--GUCG-----UGGCUCCgg -5'
22245 3' -62.3 NC_005045.1 + 4573 0.68 0.195592
Target:  5'- aAGGCGaagGCUggugcGCCAGCcuuccACCGuGGCCa -3'
miRNA:   3'- cUCCGCga-CGG-----UGGUCG-----UGGCuCCGG- -5'
22245 3' -62.3 NC_005045.1 + 32562 0.69 0.18554
Target:  5'- cGAGGUGCcuaaGCCGCUccagGGCAUCGccGCCa -3'
miRNA:   3'- -CUCCGCGa---CGGUGG----UCGUGGCucCGG- -5'
22245 3' -62.3 NC_005045.1 + 33950 0.69 0.180687
Target:  5'- cGGGCGCgggacaggGCUACCGGCAuCCGcuccgaguucauGGGCg -3'
miRNA:   3'- cUCCGCGa-------CGGUGGUCGU-GGC------------UCCGg -5'
22245 3' -62.3 NC_005045.1 + 15971 0.69 0.180687
Target:  5'- cGAGGCGCUGCU-CCAGaaGCgGAGGg- -3'
miRNA:   3'- -CUCCGCGACGGuGGUCg-UGgCUCCgg -5'
22245 3' -62.3 NC_005045.1 + 35955 0.7 0.153872
Target:  5'- uGAGGCGCUG-CGCCGuGC-CCuGGGCUu -3'
miRNA:   3'- -CUCCGCGACgGUGGU-CGuGGcUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 13149 0.7 0.151398
Target:  5'- --aGUGCagagGCCACCAGCcucgucauguacaagGCCGAGGaCCa -3'
miRNA:   3'- cucCGCGa---CGGUGGUCG---------------UGGCUCC-GG- -5'
22245 3' -62.3 NC_005045.1 + 16633 0.7 0.149769
Target:  5'- aGGGcGCGCUG-CACUGGCuggGCCGcaAGGCCg -3'
miRNA:   3'- -CUC-CGCGACgGUGGUCG---UGGC--UCCGG- -5'
22245 3' -62.3 NC_005045.1 + 28163 0.7 0.145371
Target:  5'- -uGGUGCcGCUGCCGGCACgGGucgauauGGCCa -3'
miRNA:   3'- cuCCGCGaCGGUGGUCGUGgCU-------CCGG- -5'
22245 3' -62.3 NC_005045.1 + 8254 0.7 0.141861
Target:  5'- cAGGCGCUGCgcgaACUgaucaAGCugCGAGGUg -3'
miRNA:   3'- cUCCGCGACGg---UGG-----UCGugGCUCCGg -5'
22245 3' -62.3 NC_005045.1 + 27495 0.71 0.134337
Target:  5'- -cGGCGgacgagaugauCUGCCACCAGUACCucuGGCa -3'
miRNA:   3'- cuCCGC-----------GACGGUGGUCGUGGcu-CCGg -5'
22245 3' -62.3 NC_005045.1 + 25966 0.72 0.107784
Target:  5'- -uGGCccaccuGCUGCauaccgACCAGCccugGCCGAGGCCg -3'
miRNA:   3'- cuCCG------CGACGg-----UGGUCG----UGGCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 28516 0.72 0.099159
Target:  5'- aGGGGaUGCUaGCCGgCggaAGCGCCGAGGCUc -3'
miRNA:   3'- -CUCC-GCGA-CGGUgG---UCGUGGCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 8594 0.73 0.090425
Target:  5'- -uGGUGCUGCCggcguacaugaaggGCCuccaCGCCGGGGCCu -3'
miRNA:   3'- cuCCGCGACGG--------------UGGuc--GUGGCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 26744 0.75 0.063181
Target:  5'- -cGGCGCUgucaugGCCACCGGCuccACCaAGGCCc -3'
miRNA:   3'- cuCCGCGA------CGGUGGUCG---UGGcUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 41117 0.77 0.047488
Target:  5'- gGAGGuCGCUGCCAggaccaacacCCAGCGCCagGAGGUg -3'
miRNA:   3'- -CUCC-GCGACGGU----------GGUCGUGG--CUCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.