miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22245 3' -62.3 NC_005045.1 + 8698 1.09 0.000121
Target:  5'- gGAGGCGCUGCCACCAGCACCGAGGCCc -3'
miRNA:   3'- -CUCCGCGACGGUGGUCGUGGCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 6737 0.69 0.180687
Target:  5'- aGAGGaaccaCUGCCACCAGUucucggcguuGCuCGGGGCUu -3'
miRNA:   3'- -CUCCgc---GACGGUGGUCG----------UG-GCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 10492 0.68 0.195592
Target:  5'- cGGGGUGUcGCCccGCCGGCAaucuuccaUGAGGCUg -3'
miRNA:   3'- -CUCCGCGaCGG--UGGUCGUg-------GCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 30902 0.66 0.28692
Target:  5'- cGAGGagGCUGCCGCUGGUGCgGucguacucgaAGGCg -3'
miRNA:   3'- -CUCCg-CGACGGUGGUCGUGgC----------UCCGg -5'
22245 3' -62.3 NC_005045.1 + 16438 0.74 0.068797
Target:  5'- -uGGCgGCUGCCuGCCGGCGCUu-GGCCa -3'
miRNA:   3'- cuCCG-CGACGG-UGGUCGUGGcuCCGG- -5'
22245 3' -62.3 NC_005045.1 + 27338 0.72 0.099159
Target:  5'- -cGGCaGgUGCCGCCcuGGUAUCGAGGUCg -3'
miRNA:   3'- cuCCG-CgACGGUGG--UCGUGGCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 39878 0.7 0.138052
Target:  5'- -cGGaagaGCUGaccaacugCACCAGCGCCGAGGUUu -3'
miRNA:   3'- cuCCg---CGACg-------GUGGUCGUGGCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 38060 0.69 0.161948
Target:  5'- cAGGCGCUGCCcuCUGGCcGCCGAucgucuaGGUCu -3'
miRNA:   3'- cUCCGCGACGGu-GGUCG-UGGCU-------CCGG- -5'
22245 3' -62.3 NC_005045.1 + 7289 0.69 0.166796
Target:  5'- gGAGGUGCcagGUCauGCgGGCGCCGuaggcGGGCCg -3'
miRNA:   3'- -CUCCGCGa--CGG--UGgUCGUGGC-----UCCGG- -5'
22245 3' -62.3 NC_005045.1 + 28557 0.69 0.175946
Target:  5'- -uGGCGCUugGCU-CCAcCugCGAGGCCa -3'
miRNA:   3'- cuCCGCGA--CGGuGGUcGugGCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 3290 0.69 0.171317
Target:  5'- cGGGUGcCUGCCucAUCAGCACCcAGGUa -3'
miRNA:   3'- cUCCGC-GACGG--UGGUCGUGGcUCCGg -5'
22245 3' -62.3 NC_005045.1 + 5041 0.69 0.166796
Target:  5'- -uGGCGCUgGCCuucacguCCAGCAgCuuGGCCg -3'
miRNA:   3'- cuCCGCGA-CGGu------GGUCGUgGcuCCGG- -5'
22245 3' -62.3 NC_005045.1 + 4128 0.77 0.04484
Target:  5'- cAGGCGcCUGCCAgCAG-GCCGAGGCa -3'
miRNA:   3'- cUCCGC-GACGGUgGUCgUGGCUCCGg -5'
22245 3' -62.3 NC_005045.1 + 34508 0.69 0.171317
Target:  5'- -uGGCGCUggucagGCCGCUGGC-CCGcugugcaacgGGGCCg -3'
miRNA:   3'- cuCCGCGA------CGGUGGUCGuGGC----------UCCGG- -5'
22245 3' -62.3 NC_005045.1 + 26107 0.76 0.054792
Target:  5'- -cGGUGCUgcGCCACCAGCAUCGcaaugcugcGGCCa -3'
miRNA:   3'- cuCCGCGA--CGGUGGUCGUGGCu--------CCGG- -5'
22245 3' -62.3 NC_005045.1 + 35434 0.69 0.166796
Target:  5'- uGGaGUGCU-CCGCCAGCccgaagACCGGGGCg -3'
miRNA:   3'- cUC-CGCGAcGGUGGUCG------UGGCUCCGg -5'
22245 3' -62.3 NC_005045.1 + 14952 0.69 0.171317
Target:  5'- uGAGGCaCUGCCugcgggacaGCCGGUACagcaGGGGCg -3'
miRNA:   3'- -CUCCGcGACGG---------UGGUCGUGg---CUCCGg -5'
22245 3' -62.3 NC_005045.1 + 9884 0.69 0.190508
Target:  5'- cAGGCGCggGCCGCCu---UCGGGGUCg -3'
miRNA:   3'- cUCCGCGa-CGGUGGucguGGCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 32802 0.75 0.063181
Target:  5'- -cGGUGCUGCCgcgaaccuggACCagGGUAUCGAGGCCc -3'
miRNA:   3'- cuCCGCGACGG----------UGG--UCGUGGCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 746 0.71 0.134337
Target:  5'- uAGGCGU--CCAUCAGCGCCGcAGGUg -3'
miRNA:   3'- cUCCGCGacGGUGGUCGUGGC-UCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.