miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22245 3' -62.3 NC_005045.1 + 24003 0.68 0.200794
Target:  5'- aGGGGUuggccgGCUGCCugUacaacGGCACCGGaGCCu -3'
miRNA:   3'- -CUCCG------CGACGGugG-----UCGUGGCUcCGG- -5'
22245 3' -62.3 NC_005045.1 + 30366 0.69 0.171317
Target:  5'- -uGGCGCUGaacuCGCgCAGgGCCuGGGCCg -3'
miRNA:   3'- cuCCGCGACg---GUG-GUCgUGGcUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 15922 0.67 0.253207
Target:  5'- -cGGCGCauCCA-CAGCACCucGGCCu -3'
miRNA:   3'- cuCCGCGacGGUgGUCGUGGcuCCGG- -5'
22245 3' -62.3 NC_005045.1 + 42315 0.67 0.240662
Target:  5'- -uGGCGCUGguagcCCACCgcagGGCGCUGGGuaugaGCCg -3'
miRNA:   3'- cuCCGCGAC-----GGUGG----UCGUGGCUC-----CGG- -5'
22245 3' -62.3 NC_005045.1 + 10492 0.68 0.195592
Target:  5'- cGGGGUGUcGCCccGCCGGCAaucuuccaUGAGGCUg -3'
miRNA:   3'- -CUCCGCGaCGG--UGGUCGUg-------GCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 7289 0.69 0.166796
Target:  5'- gGAGGUGCcagGUCauGCgGGCGCCGuaggcGGGCCg -3'
miRNA:   3'- -CUCCGCGa--CGG--UGgUCGUGGC-----UCCGG- -5'
22245 3' -62.3 NC_005045.1 + 29374 0.67 0.234586
Target:  5'- -cGGCcuucuGCUGCUgcGCCAGCGCCuguaGGGCa -3'
miRNA:   3'- cuCCG-----CGACGG--UGGUCGUGGc---UCCGg -5'
22245 3' -62.3 NC_005045.1 + 5041 0.69 0.166796
Target:  5'- -uGGCGCUgGCCuucacguCCAGCAgCuuGGCCg -3'
miRNA:   3'- cuCCGCGA-CGGu------GGUCGUgGcuCCGG- -5'
22245 3' -62.3 NC_005045.1 + 35434 0.69 0.166796
Target:  5'- uGGaGUGCU-CCGCCAGCccgaagACCGGGGCg -3'
miRNA:   3'- cUC-CGCGAcGGUGGUCG------UGGCUCCGg -5'
22245 3' -62.3 NC_005045.1 + 28557 0.69 0.175946
Target:  5'- -uGGCGCUugGCU-CCAcCugCGAGGCCa -3'
miRNA:   3'- cuCCGCGA--CGGuGGUcGugGCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 27869 0.68 0.197659
Target:  5'- uAGGCGCcgGCCACgGGCugUagcugauacacggcaGAGGCa -3'
miRNA:   3'- cUCCGCGa-CGGUGgUCGugG---------------CUCCGg -5'
22245 3' -62.3 NC_005045.1 + 15071 0.68 0.217128
Target:  5'- -cGGCaGCgggaGCCGCC---ACCGGGGCCa -3'
miRNA:   3'- cuCCG-CGa---CGGUGGucgUGGCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 9884 0.69 0.190508
Target:  5'- cAGGCGCggGCCGCCu---UCGGGGUCg -3'
miRNA:   3'- cUCCGCGa-CGGUGGucguGGCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 6737 0.69 0.180687
Target:  5'- aGAGGaaccaCUGCCACCAGUucucggcguuGCuCGGGGCUu -3'
miRNA:   3'- -CUCCgc---GACGGUGGUCG----------UG-GCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 14952 0.69 0.171317
Target:  5'- uGAGGCaCUGCCugcgggacaGCCGGUACagcaGGGGCg -3'
miRNA:   3'- -CUCCGcGACGG---------UGGUCGUGg---CUCCGg -5'
22245 3' -62.3 NC_005045.1 + 3290 0.69 0.171317
Target:  5'- cGGGUGcCUGCCucAUCAGCACCcAGGUa -3'
miRNA:   3'- cUCCGC-GACGG--UGGUCGUGGcUCCGg -5'
22245 3' -62.3 NC_005045.1 + 13624 0.66 0.28692
Target:  5'- cAGGCGCUcGCUcauguaGCgGGCAgCGucGGCCa -3'
miRNA:   3'- cUCCGCGA-CGG------UGgUCGUgGCu-CCGG- -5'
22245 3' -62.3 NC_005045.1 + 2811 0.66 0.266285
Target:  5'- uGGGUGCaGCCuuggcgGCCAGCGCUuccAGGUCa -3'
miRNA:   3'- cUCCGCGaCGG------UGGUCGUGGc--UCCGG- -5'
22245 3' -62.3 NC_005045.1 + 41307 0.67 0.246868
Target:  5'- uGGGUGUUcGCacagcacaGCgGGCGCCGGGGCg -3'
miRNA:   3'- cUCCGCGA-CGg-------UGgUCGUGGCUCCGg -5'
22245 3' -62.3 NC_005045.1 + 252 0.67 0.240662
Target:  5'- -uGGCGCUGguagcCCACCgcagGGCGCUGGGuaugaGCCg -3'
miRNA:   3'- cuCCGCGAC-----GGUGG----UCGUGGCUC-----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.