miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22245 3' -62.3 NC_005045.1 + 12497 0.68 0.217128
Target:  5'- aGGGCGUcGCCGCUGGUGCUGAacacgGGCg -3'
miRNA:   3'- cUCCGCGaCGGUGGUCGUGGCU-----CCGg -5'
22245 3' -62.3 NC_005045.1 + 13149 0.7 0.151398
Target:  5'- --aGUGCagagGCCACCAGCcucgucauguacaagGCCGAGGaCCa -3'
miRNA:   3'- cucCGCGa---CGGUGGUCG---------------UGGCUCC-GG- -5'
22245 3' -62.3 NC_005045.1 + 13624 0.66 0.28692
Target:  5'- cAGGCGCUcGCUcauguaGCgGGCAgCGucGGCCa -3'
miRNA:   3'- cUCCGCGA-CGG------UGgUCGUgGCu-CCGG- -5'
22245 3' -62.3 NC_005045.1 + 13746 0.66 0.273027
Target:  5'- cGGGuCGCa-CCACCGGCAUUGcucuacAGGCCa -3'
miRNA:   3'- cUCC-GCGacGGUGGUCGUGGC------UCCGG- -5'
22245 3' -62.3 NC_005045.1 + 14952 0.69 0.171317
Target:  5'- uGAGGCaCUGCCugcgggacaGCCGGUACagcaGGGGCg -3'
miRNA:   3'- -CUCCGcGACGG---------UGGUCGUGg---CUCCGg -5'
22245 3' -62.3 NC_005045.1 + 15071 0.68 0.217128
Target:  5'- -cGGCaGCgggaGCCGCC---ACCGGGGCCa -3'
miRNA:   3'- cuCCG-CGa---CGGUGGucgUGGCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 15861 0.67 0.228639
Target:  5'- cGAGGUGCUGUgGau-GCGCCGAacGCCg -3'
miRNA:   3'- -CUCCGCGACGgUgguCGUGGCUc-CGG- -5'
22245 3' -62.3 NC_005045.1 + 15922 0.67 0.253207
Target:  5'- -cGGCGCauCCA-CAGCACCucGGCCu -3'
miRNA:   3'- cuCCGCGacGGUgGUCGUGGcuCCGG- -5'
22245 3' -62.3 NC_005045.1 + 15971 0.69 0.180687
Target:  5'- cGAGGCGCUGCU-CCAGaaGCgGAGGg- -3'
miRNA:   3'- -CUCCGCGACGGuGGUCg-UGgCUCCgg -5'
22245 3' -62.3 NC_005045.1 + 16438 0.74 0.068797
Target:  5'- -uGGCgGCUGCCuGCCGGCGCUu-GGCCa -3'
miRNA:   3'- cuCCG-CGACGG-UGGUCGUGGcuCCGG- -5'
22245 3' -62.3 NC_005045.1 + 16633 0.7 0.149769
Target:  5'- aGGGcGCGCUG-CACUGGCuggGCCGcaAGGCCg -3'
miRNA:   3'- -CUC-CGCGACgGUGGUCG---UGGC--UCCGG- -5'
22245 3' -62.3 NC_005045.1 + 17803 0.68 0.200794
Target:  5'- uGAGGCGUucaaUGCaaugGCCGcCGCCGAGGUg -3'
miRNA:   3'- -CUCCGCG----ACGg---UGGUcGUGGCUCCGg -5'
22245 3' -62.3 NC_005045.1 + 18830 0.66 0.266285
Target:  5'- cAGGCGCaGCU-CCGcCACCuGGGCCa -3'
miRNA:   3'- cUCCGCGaCGGuGGUcGUGGcUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 22624 0.68 0.206117
Target:  5'- cAGGCGUucauguauggUGCCaACCAGCgagacGCCGAGcGCg -3'
miRNA:   3'- cUCCGCG----------ACGG-UGGUCG-----UGGCUC-CGg -5'
22245 3' -62.3 NC_005045.1 + 23425 0.66 0.301363
Target:  5'- -cGGUaGCU-CCGCCGGCugCGGGuGCa -3'
miRNA:   3'- cuCCG-CGAcGGUGGUCGugGCUC-CGg -5'
22245 3' -62.3 NC_005045.1 + 23480 0.67 0.228052
Target:  5'- -cGGCGgaGCUACCGGgGCCGgcugagcGGGUg -3'
miRNA:   3'- cuCCGCgaCGGUGGUCgUGGC-------UCCGg -5'
22245 3' -62.3 NC_005045.1 + 24003 0.68 0.200794
Target:  5'- aGGGGUuggccgGCUGCCugUacaacGGCACCGGaGCCu -3'
miRNA:   3'- -CUCCG------CGACGGugG-----UCGUGGCUcCGG- -5'
22245 3' -62.3 NC_005045.1 + 25966 0.72 0.107784
Target:  5'- -uGGCccaccuGCUGCauaccgACCAGCccugGCCGAGGCCg -3'
miRNA:   3'- cuCCG------CGACGg-----UGGUCG----UGGCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 26107 0.76 0.054792
Target:  5'- -cGGUGCUgcGCCACCAGCAUCGcaaugcugcGGCCa -3'
miRNA:   3'- cuCCGCGA--CGGUGGUCGUGGCu--------CCGG- -5'
22245 3' -62.3 NC_005045.1 + 26744 0.75 0.063181
Target:  5'- -cGGCGCUgucaugGCCACCGGCuccACCaAGGCCc -3'
miRNA:   3'- cuCCGCGA------CGGUGGUCG---UGGcUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.