miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22245 3' -62.3 NC_005045.1 + 30366 0.69 0.171317
Target:  5'- -uGGCGCUGaacuCGCgCAGgGCCuGGGCCg -3'
miRNA:   3'- cuCCGCGACg---GUG-GUCgUGGcUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 29526 0.66 0.266285
Target:  5'- cAGGCugaGCUGCCGggaCAGUucgucGCCGGuGGCCu -3'
miRNA:   3'- cUCCG---CGACGGUg--GUCG-----UGGCU-CCGG- -5'
22245 3' -62.3 NC_005045.1 + 29374 0.67 0.234586
Target:  5'- -cGGCcuucuGCUGCUgcGCCAGCGCCuguaGGGCa -3'
miRNA:   3'- cuCCG-----CGACGG--UGGUCGUGGc---UCCGg -5'
22245 3' -62.3 NC_005045.1 + 29305 0.68 0.195592
Target:  5'- cAGGCGCUGgCGCagCAGCagaagGCCGAGGa- -3'
miRNA:   3'- cUCCGCGACgGUG--GUCG-----UGGCUCCgg -5'
22245 3' -62.3 NC_005045.1 + 28557 0.69 0.175946
Target:  5'- -uGGCGCUugGCU-CCAcCugCGAGGCCa -3'
miRNA:   3'- cuCCGCGA--CGGuGGUcGugGCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 28516 0.72 0.099159
Target:  5'- aGGGGaUGCUaGCCGgCggaAGCGCCGAGGCUc -3'
miRNA:   3'- -CUCC-GCGA-CGGUgG---UCGUGGCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 28462 0.67 0.253207
Target:  5'- -uGGcCGCUaGCUACCgcaAGCaaGCCGuGGCCu -3'
miRNA:   3'- cuCC-GCGA-CGGUGG---UCG--UGGCuCCGG- -5'
22245 3' -62.3 NC_005045.1 + 28163 0.7 0.145371
Target:  5'- -uGGUGCcGCUGCCGGCACgGGucgauauGGCCa -3'
miRNA:   3'- cuCCGCGaCGGUGGUCGUGgCU-------CCGG- -5'
22245 3' -62.3 NC_005045.1 + 27869 0.68 0.197659
Target:  5'- uAGGCGCcgGCCACgGGCugUagcugauacacggcaGAGGCa -3'
miRNA:   3'- cUCCGCGa-CGGUGgUCGugG---------------CUCCGg -5'
22245 3' -62.3 NC_005045.1 + 27495 0.71 0.134337
Target:  5'- -cGGCGgacgagaugauCUGCCACCAGUACCucuGGCa -3'
miRNA:   3'- cuCCGC-----------GACGGUGGUCGUGGcu-CCGg -5'
22245 3' -62.3 NC_005045.1 + 27338 0.72 0.099159
Target:  5'- -cGGCaGgUGCCGCCcuGGUAUCGAGGUCg -3'
miRNA:   3'- cuCCG-CgACGGUGG--UCGUGGCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 26814 0.68 0.22282
Target:  5'- uGGGCagaGCggGCCGCCuacGGCACCGAuugGGUCc -3'
miRNA:   3'- cUCCG---CGa-CGGUGG---UCGUGGCU---CCGG- -5'
22245 3' -62.3 NC_005045.1 + 26744 0.75 0.063181
Target:  5'- -cGGCGCUgucaugGCCACCGGCuccACCaAGGCCc -3'
miRNA:   3'- cuCCGCGA------CGGUGGUCG---UGGcUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 26107 0.76 0.054792
Target:  5'- -cGGUGCUgcGCCACCAGCAUCGcaaugcugcGGCCa -3'
miRNA:   3'- cuCCGCGA--CGGUGGUCGUGGCu--------CCGG- -5'
22245 3' -62.3 NC_005045.1 + 25966 0.72 0.107784
Target:  5'- -uGGCccaccuGCUGCauaccgACCAGCccugGCCGAGGCCg -3'
miRNA:   3'- cuCCG------CGACGg-----UGGUCG----UGGCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 24003 0.68 0.200794
Target:  5'- aGGGGUuggccgGCUGCCugUacaacGGCACCGGaGCCu -3'
miRNA:   3'- -CUCCG------CGACGGugG-----UCGUGGCUcCGG- -5'
22245 3' -62.3 NC_005045.1 + 23480 0.67 0.228052
Target:  5'- -cGGCGgaGCUACCGGgGCCGgcugagcGGGUg -3'
miRNA:   3'- cuCCGCgaCGGUGGUCgUGGC-------UCCGg -5'
22245 3' -62.3 NC_005045.1 + 23425 0.66 0.301363
Target:  5'- -cGGUaGCU-CCGCCGGCugCGGGuGCa -3'
miRNA:   3'- cuCCG-CGAcGGUGGUCGugGCUC-CGg -5'
22245 3' -62.3 NC_005045.1 + 22624 0.68 0.206117
Target:  5'- cAGGCGUucauguauggUGCCaACCAGCgagacGCCGAGcGCg -3'
miRNA:   3'- cUCCGCG----------ACGG-UGGUCG-----UGGCUC-CGg -5'
22245 3' -62.3 NC_005045.1 + 18830 0.66 0.266285
Target:  5'- cAGGCGCaGCU-CCGcCACCuGGGCCa -3'
miRNA:   3'- cUCCGCGaCGGuGGUcGUGGcUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.