miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22245 3' -62.3 NC_005045.1 + 42315 0.67 0.240662
Target:  5'- -uGGCGCUGguagcCCACCgcagGGCGCUGGGuaugaGCCg -3'
miRNA:   3'- cuCCGCGAC-----GGUGG----UCGUGGCUC-----CGG- -5'
22245 3' -62.3 NC_005045.1 + 41369 0.67 0.253207
Target:  5'- aGGGCGUccugauagGCCGCuaCAGCGCgGAucaGGCCa -3'
miRNA:   3'- cUCCGCGa-------CGGUG--GUCGUGgCU---CCGG- -5'
22245 3' -62.3 NC_005045.1 + 41307 0.67 0.246868
Target:  5'- uGGGUGUUcGCacagcacaGCgGGCGCCGGGGCg -3'
miRNA:   3'- cUCCGCGA-CGg-------UGgUCGUGGCUCCGg -5'
22245 3' -62.3 NC_005045.1 + 41117 0.77 0.047488
Target:  5'- gGAGGuCGCUGCCAggaccaacacCCAGCGCCagGAGGUg -3'
miRNA:   3'- -CUCC-GCGACGGU----------GGUCGUGG--CUCCGg -5'
22245 3' -62.3 NC_005045.1 + 40588 0.68 0.211561
Target:  5'- cGAGG-GCaGCCGCCAgggcuGCGCCGcgcagGGGCUu -3'
miRNA:   3'- -CUCCgCGaCGGUGGU-----CGUGGC-----UCCGG- -5'
22245 3' -62.3 NC_005045.1 + 39878 0.7 0.138052
Target:  5'- -cGGaagaGCUGaccaacugCACCAGCGCCGAGGUUu -3'
miRNA:   3'- cuCCg---CGACg-------GUGGUCGUGGCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 39645 0.66 0.273027
Target:  5'- -uGGUGCccagccuccaGCCAUCAGCGCCGgcAGGUa -3'
miRNA:   3'- cuCCGCGa---------CGGUGGUCGUGGC--UCCGg -5'
22245 3' -62.3 NC_005045.1 + 38060 0.69 0.161948
Target:  5'- cAGGCGCUGCCcuCUGGCcGCCGAucgucuaGGUCu -3'
miRNA:   3'- cUCCGCGACGGu-GGUCG-UGGCU-------CCGG- -5'
22245 3' -62.3 NC_005045.1 + 37389 0.66 0.273027
Target:  5'- --aGCGCcGCCGCCGGgACCGGGauuauCCa -3'
miRNA:   3'- cucCGCGaCGGUGGUCgUGGCUCc----GG- -5'
22245 3' -62.3 NC_005045.1 + 37335 0.68 0.217128
Target:  5'- -uGGCGC-GCUAUCAguGCGCCGGacaauaacGGCCa -3'
miRNA:   3'- cuCCGCGaCGGUGGU--CGUGGCU--------CCGG- -5'
22245 3' -62.3 NC_005045.1 + 35955 0.7 0.153872
Target:  5'- uGAGGCGCUG-CGCCGuGC-CCuGGGCUu -3'
miRNA:   3'- -CUCCGCGACgGUGGU-CGuGGcUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 35434 0.69 0.166796
Target:  5'- uGGaGUGCU-CCGCCAGCccgaagACCGGGGCg -3'
miRNA:   3'- cUC-CGCGAcGGUGGUCG------UGGCUCCGg -5'
22245 3' -62.3 NC_005045.1 + 34508 0.69 0.171317
Target:  5'- -uGGCGCUggucagGCCGCUGGC-CCGcugugcaacgGGGCCg -3'
miRNA:   3'- cuCCGCGA------CGGUGGUCGuGGC----------UCCGG- -5'
22245 3' -62.3 NC_005045.1 + 33950 0.69 0.180687
Target:  5'- cGGGCGCgggacaggGCUACCGGCAuCCGcuccgaguucauGGGCg -3'
miRNA:   3'- cUCCGCGa-------CGGUGGUCGU-GGC------------UCCGg -5'
22245 3' -62.3 NC_005045.1 + 32802 0.75 0.063181
Target:  5'- -cGGUGCUGCCgcgaaccuggACCagGGUAUCGAGGCCc -3'
miRNA:   3'- cuCCGCGACGG----------UGG--UCGUGGCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 32562 0.69 0.18554
Target:  5'- cGAGGUGCcuaaGCCGCUccagGGCAUCGccGCCa -3'
miRNA:   3'- -CUCCGCGa---CGGUGG----UCGUGGCucCGG- -5'
22245 3' -62.3 NC_005045.1 + 32132 0.68 0.217128
Target:  5'- -uGGCuGCUGCUGgCGGCGCUG-GGCa -3'
miRNA:   3'- cuCCG-CGACGGUgGUCGUGGCuCCGg -5'
22245 3' -62.3 NC_005045.1 + 30902 0.66 0.28692
Target:  5'- cGAGGagGCUGCCGCUGGUGCgGucguacucgaAGGCg -3'
miRNA:   3'- -CUCCg-CGACGGUGGUCGUGgC----------UCCGg -5'
22245 3' -62.3 NC_005045.1 + 30556 0.68 0.217128
Target:  5'- cGGGU-CUGCuCACCAGCGacaCG-GGCCg -3'
miRNA:   3'- cUCCGcGACG-GUGGUCGUg--GCuCCGG- -5'
22245 3' -62.3 NC_005045.1 + 30458 0.66 0.266285
Target:  5'- -cGGCGaaaGCgACCugAGCAauaaCGAGGCCg -3'
miRNA:   3'- cuCCGCga-CGgUGG--UCGUg---GCUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.