miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22245 3' -62.3 NC_005045.1 + 26814 0.68 0.22282
Target:  5'- uGGGCagaGCggGCCGCCuacGGCACCGAuugGGUCc -3'
miRNA:   3'- cUCCG---CGa-CGGUGG---UCGUGGCU---CCGG- -5'
22245 3' -62.3 NC_005045.1 + 27338 0.72 0.099159
Target:  5'- -cGGCaGgUGCCGCCcuGGUAUCGAGGUCg -3'
miRNA:   3'- cuCCG-CgACGGUGG--UCGUGGCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 27495 0.71 0.134337
Target:  5'- -cGGCGgacgagaugauCUGCCACCAGUACCucuGGCa -3'
miRNA:   3'- cuCCGC-----------GACGGUGGUCGUGGcu-CCGg -5'
22245 3' -62.3 NC_005045.1 + 27869 0.68 0.197659
Target:  5'- uAGGCGCcgGCCACgGGCugUagcugauacacggcaGAGGCa -3'
miRNA:   3'- cUCCGCGa-CGGUGgUCGugG---------------CUCCGg -5'
22245 3' -62.3 NC_005045.1 + 28163 0.7 0.145371
Target:  5'- -uGGUGCcGCUGCCGGCACgGGucgauauGGCCa -3'
miRNA:   3'- cuCCGCGaCGGUGGUCGUGgCU-------CCGG- -5'
22245 3' -62.3 NC_005045.1 + 28462 0.67 0.253207
Target:  5'- -uGGcCGCUaGCUACCgcaAGCaaGCCGuGGCCu -3'
miRNA:   3'- cuCC-GCGA-CGGUGG---UCG--UGGCuCCGG- -5'
22245 3' -62.3 NC_005045.1 + 28516 0.72 0.099159
Target:  5'- aGGGGaUGCUaGCCGgCggaAGCGCCGAGGCUc -3'
miRNA:   3'- -CUCC-GCGA-CGGUgG---UCGUGGCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 28557 0.69 0.175946
Target:  5'- -uGGCGCUugGCU-CCAcCugCGAGGCCa -3'
miRNA:   3'- cuCCGCGA--CGGuGGUcGugGCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 29305 0.68 0.195592
Target:  5'- cAGGCGCUGgCGCagCAGCagaagGCCGAGGa- -3'
miRNA:   3'- cUCCGCGACgGUG--GUCG-----UGGCUCCgg -5'
22245 3' -62.3 NC_005045.1 + 29374 0.67 0.234586
Target:  5'- -cGGCcuucuGCUGCUgcGCCAGCGCCuguaGGGCa -3'
miRNA:   3'- cuCCG-----CGACGG--UGGUCGUGGc---UCCGg -5'
22245 3' -62.3 NC_005045.1 + 29526 0.66 0.266285
Target:  5'- cAGGCugaGCUGCCGggaCAGUucgucGCCGGuGGCCu -3'
miRNA:   3'- cUCCG---CGACGGUg--GUCG-----UGGCU-CCGG- -5'
22245 3' -62.3 NC_005045.1 + 30366 0.69 0.171317
Target:  5'- -uGGCGCUGaacuCGCgCAGgGCCuGGGCCg -3'
miRNA:   3'- cuCCGCGACg---GUG-GUCgUGGcUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 30458 0.66 0.266285
Target:  5'- -cGGCGaaaGCgACCugAGCAauaaCGAGGCCg -3'
miRNA:   3'- cuCCGCga-CGgUGG--UCGUg---GCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 30556 0.68 0.217128
Target:  5'- cGGGU-CUGCuCACCAGCGacaCG-GGCCg -3'
miRNA:   3'- cUCCGcGACG-GUGGUCGUg--GCuCCGG- -5'
22245 3' -62.3 NC_005045.1 + 30902 0.66 0.28692
Target:  5'- cGAGGagGCUGCCGCUGGUGCgGucguacucgaAGGCg -3'
miRNA:   3'- -CUCCg-CGACGGUGGUCGUGgC----------UCCGg -5'
22245 3' -62.3 NC_005045.1 + 32132 0.68 0.217128
Target:  5'- -uGGCuGCUGCUGgCGGCGCUG-GGCa -3'
miRNA:   3'- cuCCG-CGACGGUgGUCGUGGCuCCGg -5'
22245 3' -62.3 NC_005045.1 + 32562 0.69 0.18554
Target:  5'- cGAGGUGCcuaaGCCGCUccagGGCAUCGccGCCa -3'
miRNA:   3'- -CUCCGCGa---CGGUGG----UCGUGGCucCGG- -5'
22245 3' -62.3 NC_005045.1 + 32802 0.75 0.063181
Target:  5'- -cGGUGCUGCCgcgaaccuggACCagGGUAUCGAGGCCc -3'
miRNA:   3'- cuCCGCGACGG----------UGG--UCGUGGCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 33950 0.69 0.180687
Target:  5'- cGGGCGCgggacaggGCUACCGGCAuCCGcuccgaguucauGGGCg -3'
miRNA:   3'- cUCCGCGa-------CGGUGGUCGU-GGC------------UCCGg -5'
22245 3' -62.3 NC_005045.1 + 34508 0.69 0.171317
Target:  5'- -uGGCGCUggucagGCCGCUGGC-CCGcugugcaacgGGGCCg -3'
miRNA:   3'- cuCCGCGA------CGGUGGUCGuGGC----------UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.