Results 41 - 60 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22245 | 3' | -62.3 | NC_005045.1 | + | 12497 | 0.68 | 0.217128 |
Target: 5'- aGGGCGUcGCCGCUGGUGCUGAacacgGGCg -3' miRNA: 3'- cUCCGCGaCGGUGGUCGUGGCU-----CCGg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 23480 | 0.67 | 0.228052 |
Target: 5'- -cGGCGgaGCUACCGGgGCCGgcugagcGGGUg -3' miRNA: 3'- cuCCGCgaCGGUGGUCgUGGC-------UCCGg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 29374 | 0.67 | 0.234586 |
Target: 5'- -cGGCcuucuGCUGCUgcGCCAGCGCCuguaGGGCa -3' miRNA: 3'- cuCCG-----CGACGG--UGGUCGUGGc---UCCGg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 42315 | 0.67 | 0.240662 |
Target: 5'- -uGGCGCUGguagcCCACCgcagGGCGCUGGGuaugaGCCg -3' miRNA: 3'- cuCCGCGAC-----GGUGG----UCGUGGCUC-----CGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 252 | 0.67 | 0.240662 |
Target: 5'- -uGGCGCUGguagcCCACCgcagGGCGCUGGGuaugaGCCg -3' miRNA: 3'- cuCCGCGAC-----GGUGG----UCGUGGCUC-----CGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 14952 | 0.69 | 0.171317 |
Target: 5'- uGAGGCaCUGCCugcgggacaGCCGGUACagcaGGGGCg -3' miRNA: 3'- -CUCCGcGACGG---------UGGUCGUGg---CUCCGg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 34508 | 0.69 | 0.171317 |
Target: 5'- -uGGCGCUggucagGCCGCUGGC-CCGcugugcaacgGGGCCg -3' miRNA: 3'- cuCCGCGA------CGGUGGUCGuGGC----------UCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 3290 | 0.69 | 0.171317 |
Target: 5'- cGGGUGcCUGCCucAUCAGCACCcAGGUa -3' miRNA: 3'- cUCCGC-GACGG--UGGUCGUGGcUCCGg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 4128 | 0.77 | 0.04484 |
Target: 5'- cAGGCGcCUGCCAgCAG-GCCGAGGCa -3' miRNA: 3'- cUCCGC-GACGGUgGUCgUGGCUCCGg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 26107 | 0.76 | 0.054792 |
Target: 5'- -cGGUGCUgcGCCACCAGCAUCGcaaugcugcGGCCa -3' miRNA: 3'- cuCCGCGA--CGGUGGUCGUGGCu--------CCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 32802 | 0.75 | 0.063181 |
Target: 5'- -cGGUGCUGCCgcgaaccuggACCagGGUAUCGAGGCCc -3' miRNA: 3'- cuCCGCGACGG----------UGG--UCGUGGCUCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 16438 | 0.74 | 0.068797 |
Target: 5'- -uGGCgGCUGCCuGCCGGCGCUu-GGCCa -3' miRNA: 3'- cuCCG-CGACGG-UGGUCGUGGcuCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 27338 | 0.72 | 0.099159 |
Target: 5'- -cGGCaGgUGCCGCCcuGGUAUCGAGGUCg -3' miRNA: 3'- cuCCG-CgACGGUGG--UCGUGGCUCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 746 | 0.71 | 0.134337 |
Target: 5'- uAGGCGU--CCAUCAGCGCCGcAGGUg -3' miRNA: 3'- cUCCGCGacGGUGGUCGUGGC-UCCGg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 39878 | 0.7 | 0.138052 |
Target: 5'- -cGGaagaGCUGaccaacugCACCAGCGCCGAGGUUu -3' miRNA: 3'- cuCCg---CGACg-------GUGGUCGUGGCUCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 38060 | 0.69 | 0.161948 |
Target: 5'- cAGGCGCUGCCcuCUGGCcGCCGAucgucuaGGUCu -3' miRNA: 3'- cUCCGCGACGGu-GGUCG-UGGCU-------CCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 35434 | 0.69 | 0.166796 |
Target: 5'- uGGaGUGCU-CCGCCAGCccgaagACCGGGGCg -3' miRNA: 3'- cUC-CGCGAcGGUGGUCG------UGGCUCCGg -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 5041 | 0.69 | 0.166796 |
Target: 5'- -uGGCGCUgGCCuucacguCCAGCAgCuuGGCCg -3' miRNA: 3'- cuCCGCGA-CGGu------GGUCGUgGcuCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 7289 | 0.69 | 0.166796 |
Target: 5'- gGAGGUGCcagGUCauGCgGGCGCCGuaggcGGGCCg -3' miRNA: 3'- -CUCCGCGa--CGG--UGgUCGUGGC-----UCCGG- -5' |
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22245 | 3' | -62.3 | NC_005045.1 | + | 30366 | 0.69 | 0.171317 |
Target: 5'- -uGGCGCUGaacuCGCgCAGgGCCuGGGCCg -3' miRNA: 3'- cuCCGCGACg---GUG-GUCgUGGcUCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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