miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22245 3' -62.3 NC_005045.1 + 15861 0.67 0.228639
Target:  5'- cGAGGUGCUGUgGau-GCGCCGAacGCCg -3'
miRNA:   3'- -CUCCGCGACGgUgguCGUGGCUc-CGG- -5'
22245 3' -62.3 NC_005045.1 + 23480 0.67 0.228052
Target:  5'- -cGGCGgaGCUACCGGgGCCGgcugagcGGGUg -3'
miRNA:   3'- cuCCGCgaCGGUGGUCgUGGC-------UCCGg -5'
22245 3' -62.3 NC_005045.1 + 26814 0.68 0.22282
Target:  5'- uGGGCagaGCggGCCGCCuacGGCACCGAuugGGUCc -3'
miRNA:   3'- cUCCG---CGa-CGGUGG---UCGUGGCU---CCGG- -5'
22245 3' -62.3 NC_005045.1 + 11804 0.68 0.22282
Target:  5'- uGGGCug-GCUACCuggagcGCugCGAGGCCc -3'
miRNA:   3'- cUCCGcgaCGGUGGu-----CGugGCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 37335 0.68 0.217128
Target:  5'- -uGGCGC-GCUAUCAguGCGCCGGacaauaacGGCCa -3'
miRNA:   3'- cuCCGCGaCGGUGGU--CGUGGCU--------CCGG- -5'
22245 3' -62.3 NC_005045.1 + 15071 0.68 0.217128
Target:  5'- -cGGCaGCgggaGCCGCC---ACCGGGGCCa -3'
miRNA:   3'- cuCCG-CGa---CGGUGGucgUGGCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 32132 0.68 0.217128
Target:  5'- -uGGCuGCUGCUGgCGGCGCUG-GGCa -3'
miRNA:   3'- cuCCG-CGACGGUgGUCGUGGCuCCGg -5'
22245 3' -62.3 NC_005045.1 + 30556 0.68 0.217128
Target:  5'- cGGGU-CUGCuCACCAGCGacaCG-GGCCg -3'
miRNA:   3'- cUCCGcGACG-GUGGUCGUg--GCuCCGG- -5'
22245 3' -62.3 NC_005045.1 + 12497 0.68 0.217128
Target:  5'- aGGGCGUcGCCGCUGGUGCUGAacacgGGCg -3'
miRNA:   3'- cUCCGCGaCGGUGGUCGUGGCU-----CCGg -5'
22245 3' -62.3 NC_005045.1 + 40588 0.68 0.211561
Target:  5'- cGAGG-GCaGCCGCCAgggcuGCGCCGcgcagGGGCUu -3'
miRNA:   3'- -CUCCgCGaCGGUGGU-----CGUGGC-----UCCGG- -5'
22245 3' -62.3 NC_005045.1 + 22624 0.68 0.206117
Target:  5'- cAGGCGUucauguauggUGCCaACCAGCgagacGCCGAGcGCg -3'
miRNA:   3'- cUCCGCG----------ACGG-UGGUCG-----UGGCUC-CGg -5'
22245 3' -62.3 NC_005045.1 + 24003 0.68 0.200794
Target:  5'- aGGGGUuggccgGCUGCCugUacaacGGCACCGGaGCCu -3'
miRNA:   3'- -CUCCG------CGACGGugG-----UCGUGGCUcCGG- -5'
22245 3' -62.3 NC_005045.1 + 17803 0.68 0.200794
Target:  5'- uGAGGCGUucaaUGCaaugGCCGcCGCCGAGGUg -3'
miRNA:   3'- -CUCCGCG----ACGg---UGGUcGUGGCUCCGg -5'
22245 3' -62.3 NC_005045.1 + 27869 0.68 0.197659
Target:  5'- uAGGCGCcgGCCACgGGCugUagcugauacacggcaGAGGCa -3'
miRNA:   3'- cUCCGCGa-CGGUGgUCGugG---------------CUCCGg -5'
22245 3' -62.3 NC_005045.1 + 7983 0.68 0.197659
Target:  5'- uGAGGCGUgaUG-CGCCGGCuCCGgucccugcuuaucgaAGGCCa -3'
miRNA:   3'- -CUCCGCG--ACgGUGGUCGuGGC---------------UCCGG- -5'
22245 3' -62.3 NC_005045.1 + 10492 0.68 0.195592
Target:  5'- cGGGGUGUcGCCccGCCGGCAaucuuccaUGAGGCUg -3'
miRNA:   3'- -CUCCGCGaCGG--UGGUCGUg-------GCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 29305 0.68 0.195592
Target:  5'- cAGGCGCUGgCGCagCAGCagaagGCCGAGGa- -3'
miRNA:   3'- cUCCGCGACgGUG--GUCG-----UGGCUCCgg -5'
22245 3' -62.3 NC_005045.1 + 4573 0.68 0.195592
Target:  5'- aAGGCGaagGCUggugcGCCAGCcuuccACCGuGGCCa -3'
miRNA:   3'- cUCCGCga-CGG-----UGGUCG-----UGGCuCCGG- -5'
22245 3' -62.3 NC_005045.1 + 9884 0.69 0.190508
Target:  5'- cAGGCGCggGCCGCCu---UCGGGGUCg -3'
miRNA:   3'- cUCCGCGa-CGGUGGucguGGCUCCGG- -5'
22245 3' -62.3 NC_005045.1 + 32562 0.69 0.18554
Target:  5'- cGAGGUGCcuaaGCCGCUccagGGCAUCGccGCCa -3'
miRNA:   3'- -CUCCGCGa---CGGUGG----UCGUGGCucCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.