Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22262 | 3' | -60.6 | NC_005045.1 | + | 32633 | 0.73 | 0.116474 |
Target: 5'- gGCAGCGuACCGCGUUccguguGGUgcagGGCGGCGa -3' miRNA: 3'- -UGUCGC-UGGCGCGG------UCGaa--CCGUCGC- -5' |
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22262 | 3' | -60.6 | NC_005045.1 | + | 30835 | 0.66 | 0.359382 |
Target: 5'- ---aCGACCGCaCCAGC--GGCAGCc -3' miRNA: 3'- ugucGCUGGCGcGGUCGaaCCGUCGc -5' |
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22262 | 3' | -60.6 | NC_005045.1 | + | 22512 | 0.66 | 0.359382 |
Target: 5'- -gGGCGAUuaCGUGCCAGg-UGGC-GCGg -3' miRNA: 3'- ugUCGCUG--GCGCGGUCgaACCGuCGC- -5' |
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22262 | 3' | -60.6 | NC_005045.1 | + | 4991 | 0.66 | 0.350961 |
Target: 5'- cCAGCGccauCCGCGCCguccAGUcgucGGCAGCc -3' miRNA: 3'- uGUCGCu---GGCGCGG----UCGaa--CCGUCGc -5' |
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22262 | 3' | -60.6 | NC_005045.1 | + | 25879 | 0.66 | 0.334543 |
Target: 5'- -gAGCGccuGCCGgGCCAGCU---CAGCGa -3' miRNA: 3'- ugUCGC---UGGCgCGGUCGAaccGUCGC- -5' |
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22262 | 3' | -60.6 | NC_005045.1 | + | 23048 | 0.66 | 0.326547 |
Target: 5'- uCAGCaGGCCGCGCaGGCccaGGCcGCGc -3' miRNA: 3'- uGUCG-CUGGCGCGgUCGaa-CCGuCGC- -5' |
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22262 | 3' | -60.6 | NC_005045.1 | + | 3208 | 0.66 | 0.318694 |
Target: 5'- uACAGCGACCGCuaCCuggguGCUgaugaGGCAGgCa -3' miRNA: 3'- -UGUCGCUGGCGc-GGu----CGAa----CCGUC-Gc -5' |
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22262 | 3' | -60.6 | NC_005045.1 | + | 23338 | 0.67 | 0.302668 |
Target: 5'- cCAGCGccaugacGCCGCacuaCCAGCcggUGGCGGUGc -3' miRNA: 3'- uGUCGC-------UGGCGc---GGUCGa--ACCGUCGC- -5' |
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22262 | 3' | -60.6 | NC_005045.1 | + | 6249 | 0.67 | 0.274566 |
Target: 5'- cGCAGCcACCauCGCCGGCggcgucgugGGCAGUGu -3' miRNA: 3'- -UGUCGcUGGc-GCGGUCGaa-------CCGUCGC- -5' |
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22262 | 3' | -60.6 | NC_005045.1 | + | 17408 | 0.7 | 0.175951 |
Target: 5'- uGCGGCGGCUGCGgCGGCU-GGagucgugGGCGa -3' miRNA: 3'- -UGUCGCUGGCGCgGUCGAaCCg------UCGC- -5' |
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22262 | 3' | -60.6 | NC_005045.1 | + | 8771 | 0.69 | 0.201147 |
Target: 5'- gACGGCGgaucaaGCCGCGCCuGUacucGGCGGCc -3' miRNA: 3'- -UGUCGC------UGGCGCGGuCGaa--CCGUCGc -5' |
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22262 | 3' | -60.6 | NC_005045.1 | + | 7879 | 0.69 | 0.206549 |
Target: 5'- aACGGUacaaGGCUGCGCgacaGGC-UGGCGGCGa -3' miRNA: 3'- -UGUCG----CUGGCGCGg---UCGaACCGUCGC- -5' |
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22262 | 3' | -60.6 | NC_005045.1 | + | 29050 | 0.69 | 0.206549 |
Target: 5'- cGCGGUGAgCGUGCCcGUaUGGcCGGCGa -3' miRNA: 3'- -UGUCGCUgGCGCGGuCGaACC-GUCGC- -5' |
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22262 | 3' | -60.6 | NC_005045.1 | + | 16366 | 0.69 | 0.217729 |
Target: 5'- -aAGCuGGCCaaGCGCCGGCa-GGCAGCc -3' miRNA: 3'- ugUCG-CUGG--CGCGGUCGaaCCGUCGc -5' |
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22262 | 3' | -60.6 | NC_005045.1 | + | 20208 | 0.67 | 0.274566 |
Target: 5'- aGCAGCcaccugggacuGACCGCcCUGGCcUGcGCAGCGg -3' miRNA: 3'- -UGUCG-----------CUGGCGcGGUCGaAC-CGUCGC- -5' |
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22262 | 3' | -60.6 | NC_005045.1 | + | 24978 | 0.66 | 0.359382 |
Target: 5'- -aAGUGACgGC-CCAGCgggugGGCuGCGa -3' miRNA: 3'- ugUCGCUGgCGcGGUCGaa---CCGuCGC- -5' |
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22262 | 3' | -60.6 | NC_005045.1 | + | 17994 | 0.72 | 0.126634 |
Target: 5'- -gGGUGACCGCcuguuCCAGggUGGCGGCGc -3' miRNA: 3'- ugUCGCUGGCGc----GGUCgaACCGUCGC- -5' |
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22262 | 3' | -60.6 | NC_005045.1 | + | 16438 | 0.7 | 0.185674 |
Target: 5'- -uGGCGGCUGCcuGCCGGCgcuUGGcCAGCu -3' miRNA: 3'- ugUCGCUGGCG--CGGUCGa--ACC-GUCGc -5' |
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22262 | 3' | -60.6 | NC_005045.1 | + | 19560 | 0.7 | 0.187675 |
Target: 5'- gGCAuaGGCCGCGCgCAGCUccagcagaccugcgaUGGCgcagAGCGg -3' miRNA: 3'- -UGUcgCUGGCGCG-GUCGA---------------ACCG----UCGC- -5' |
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22262 | 3' | -60.6 | NC_005045.1 | + | 41607 | 0.7 | 0.195869 |
Target: 5'- gGCGGUGAgCGgGuCCGGUggGGUAGCGc -3' miRNA: 3'- -UGUCGCUgGCgC-GGUCGaaCCGUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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