miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22262 3' -60.6 NC_005045.1 + 2901 0.69 0.223511
Target:  5'- uGCAGCGGCC-CGCCGGgucCUUGGgGauuGCGa -3'
miRNA:   3'- -UGUCGCUGGcGCGGUC---GAACCgU---CGC- -5'
22262 3' -60.6 NC_005045.1 + 41171 0.66 0.318694
Target:  5'- gGCAGCGACCuccuugacgugGCGCU-GCaaGGUGGCa -3'
miRNA:   3'- -UGUCGCUGG-----------CGCGGuCGaaCCGUCGc -5'
22262 3' -60.6 NC_005045.1 + 23903 0.66 0.350961
Target:  5'- uCAGcCGACCGaUGgCGGcCUUGGUGGCa -3'
miRNA:   3'- uGUC-GCUGGC-GCgGUC-GAACCGUCGc -5'
22262 3' -60.6 NC_005045.1 + 24978 0.66 0.359382
Target:  5'- -aAGUGACgGC-CCAGCgggugGGCuGCGa -3'
miRNA:   3'- ugUCGCUGgCGcGGUCGaa---CCGuCGC- -5'
22262 3' -60.6 NC_005045.1 + 21845 1.08 0.000212
Target:  5'- aACAGCGACCGCGCCAGCUUGGCAGCGa -3'
miRNA:   3'- -UGUCGCUGGCGCGGUCGAACCGUCGC- -5'
22262 3' -60.6 NC_005045.1 + 17994 0.72 0.126634
Target:  5'- -gGGUGACCGCcuguuCCAGggUGGCGGCGc -3'
miRNA:   3'- ugUCGCUGGCGc----GGUCgaACCGUCGC- -5'
22262 3' -60.6 NC_005045.1 + 16438 0.7 0.185674
Target:  5'- -uGGCGGCUGCcuGCCGGCgcuUGGcCAGCu -3'
miRNA:   3'- ugUCGCUGGCG--CGGUCGa--ACC-GUCGc -5'
22262 3' -60.6 NC_005045.1 + 19560 0.7 0.187675
Target:  5'- gGCAuaGGCCGCGCgCAGCUccagcagaccugcgaUGGCgcagAGCGg -3'
miRNA:   3'- -UGUcgCUGGCGCG-GUCGA---------------ACCG----UCGC- -5'
22262 3' -60.6 NC_005045.1 + 41607 0.7 0.195869
Target:  5'- gGCGGUGAgCGgGuCCGGUggGGUAGCGc -3'
miRNA:   3'- -UGUCGCUgGCgC-GGUCGaaCCGUCGC- -5'
22262 3' -60.6 NC_005045.1 + 12560 0.66 0.318694
Target:  5'- uGCAGCucGGCCagGCGCaucaaCAGCUUGGCcGCc -3'
miRNA:   3'- -UGUCG--CUGG--CGCG-----GUCGAACCGuCGc -5'
22262 3' -60.6 NC_005045.1 + 16710 0.67 0.281566
Target:  5'- uCAGCGGCCuuGCGgcCCAGCcaGuGCAGCGc -3'
miRNA:   3'- uGUCGCUGG--CGC--GGUCGaaC-CGUCGC- -5'
22262 3' -60.6 NC_005045.1 + 4773 0.68 0.260983
Target:  5'- gACGGUGGCCG-GCuucuugauCAGCUUGGCgcccgggguagcAGCGg -3'
miRNA:   3'- -UGUCGCUGGCgCG--------GUCGAACCG------------UCGC- -5'
22262 3' -60.6 NC_005045.1 + 18881 0.69 0.229423
Target:  5'- aGCuGCGccuGCCGUGCCcGCUUGGUcuGGUGc -3'
miRNA:   3'- -UGuCGC---UGGCGCGGuCGAACCG--UCGC- -5'
22262 3' -60.6 NC_005045.1 + 35517 0.67 0.295991
Target:  5'- uGCGGCG-CCGCugacgauaucGCCGGUggcGGCuGCGg -3'
miRNA:   3'- -UGUCGCuGGCG----------CGGUCGaa-CCGuCGC- -5'
22262 3' -60.6 NC_005045.1 + 39108 0.68 0.235466
Target:  5'- aACuccuGCGacuGCCGUGUCAGCUucgcccgcucggUGGCGGUGa -3'
miRNA:   3'- -UGu---CGC---UGGCGCGGUCGA------------ACCGUCGC- -5'
22262 3' -60.6 NC_005045.1 + 25077 0.68 0.260983
Target:  5'- cACAGCuuggccugGACCgGCGCCA-CUUGGgCGGUGa -3'
miRNA:   3'- -UGUCG--------CUGG-CGCGGUcGAACC-GUCGC- -5'
22262 3' -60.6 NC_005045.1 + 5360 0.67 0.310984
Target:  5'- cCAGCGACgUGCGC--GCUcGGCGGCc -3'
miRNA:   3'- uGUCGCUG-GCGCGguCGAaCCGUCGc -5'
22262 3' -60.6 NC_005045.1 + 30671 0.66 0.342681
Target:  5'- uGguGCGGuuGCGCaCG--UUGGCGGCGg -3'
miRNA:   3'- -UguCGCUggCGCG-GUcgAACCGUCGC- -5'
22262 3' -60.6 NC_005045.1 + 40603 0.68 0.235466
Target:  5'- -gGGCGACaagGCCGGCgagGGCAGCc -3'
miRNA:   3'- ugUCGCUGgcgCGGUCGaa-CCGUCGc -5'
22262 3' -60.6 NC_005045.1 + 39296 0.68 0.241643
Target:  5'- gGCgAGCGAUgCGCGCCAGgaUagaGGguGCGa -3'
miRNA:   3'- -UG-UCGCUG-GCGCGGUCgaA---CCguCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.