Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22267 | 3' | -62.3 | NC_005045.1 | + | 38210 | 0.66 | 0.289825 |
Target: 5'- -cGCgagUGCUGAGC-GGCUgGGCcuGCu -3' miRNA: 3'- gaCGa--GCGACUCGaCCGGgCCGucCG- -5' |
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22267 | 3' | -62.3 | NC_005045.1 | + | 34317 | 0.66 | 0.28911 |
Target: 5'- cCUGCgcgggccaaUGCUGAGC-GGCCCGacauacuGCcGGCg -3' miRNA: 3'- -GACGa--------GCGACUCGaCCGGGC-------CGuCCG- -5' |
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22267 | 3' | -62.3 | NC_005045.1 | + | 29046 | 0.66 | 0.268981 |
Target: 5'- uCUGCgCGgUGAGCgugcccguaUGG-CCGGCgAGGCu -3' miRNA: 3'- -GACGaGCgACUCG---------ACCgGGCCG-UCCG- -5' |
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22267 | 3' | -62.3 | NC_005045.1 | + | 16355 | 0.66 | 0.262307 |
Target: 5'- -aGCaugaaGCgaAGCUGGCCaagcgcCGGCAGGCa -3' miRNA: 3'- gaCGag---CGacUCGACCGG------GCCGUCCG- -5' |
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22267 | 3' | -62.3 | NC_005045.1 | + | 41843 | 0.67 | 0.249364 |
Target: 5'- gCUGCggGCUGAGCUGGUCgcacaccucgaCGaGCugauGGCu -3' miRNA: 3'- -GACGagCGACUCGACCGG-----------GC-CGu---CCG- -5' |
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22267 | 3' | -62.3 | NC_005045.1 | + | 39571 | 0.67 | 0.249364 |
Target: 5'- cCUGCcggCGCUGAugGCUGGa--GGCuGGGCa -3' miRNA: 3'- -GACGa--GCGACU--CGACCgggCCG-UCCG- -5' |
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22267 | 3' | -62.3 | NC_005045.1 | + | 23451 | 0.67 | 0.243092 |
Target: 5'- gUGCUUGCggaacaacGGGUUGaCCugCGGCAGGCa -3' miRNA: 3'- gACGAGCGa-------CUCGACcGG--GCCGUCCG- -5' |
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22267 | 3' | -62.3 | NC_005045.1 | + | 6195 | 0.67 | 0.233331 |
Target: 5'- -gGCUCGUgagcGGGCgaaGGCggcggcuaaggacacCUGGCAGGCa -3' miRNA: 3'- gaCGAGCGa---CUCGa--CCG---------------GGCCGUCCG- -5' |
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22267 | 3' | -62.3 | NC_005045.1 | + | 28972 | 0.67 | 0.225062 |
Target: 5'- -cGCgcacuccgCGCcGAGCacucUGGCCCGGCuGGa -3' miRNA: 3'- gaCGa-------GCGaCUCG----ACCGGGCCGuCCg -5' |
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22267 | 3' | -62.3 | NC_005045.1 | + | 20361 | 0.68 | 0.213683 |
Target: 5'- gUGCUCGUaGAGCUGGCgaaacagcuCgGGguGGa -3' miRNA: 3'- gACGAGCGaCUCGACCG---------GgCCguCCg -5' |
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22267 | 3' | -62.3 | NC_005045.1 | + | 24046 | 0.68 | 0.213683 |
Target: 5'- uUGCUCaGCggacaGAGCU-GCCagGGCAGGUg -3' miRNA: 3'- gACGAG-CGa----CUCGAcCGGg-CCGUCCG- -5' |
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22267 | 3' | -62.3 | NC_005045.1 | + | 41612 | 0.68 | 0.20818 |
Target: 5'- uUGUaggCGgUGAGCgGGUCCGGUGGGg -3' miRNA: 3'- gACGa--GCgACUCGaCCGGGCCGUCCg -5' |
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22267 | 3' | -62.3 | NC_005045.1 | + | 32043 | 0.69 | 0.177684 |
Target: 5'- -cGCg-GCUGGuauGCUGGaCCCGGCAgcccuGGCa -3' miRNA: 3'- gaCGagCGACU---CGACC-GGGCCGU-----CCG- -5' |
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22267 | 3' | -62.3 | NC_005045.1 | + | 16661 | 0.69 | 0.173004 |
Target: 5'- -gGC-CGCUGAGgUGGUCCGGaaguuccccGGCg -3' miRNA: 3'- gaCGaGCGACUCgACCGGGCCgu-------CCG- -5' |
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22267 | 3' | -62.3 | NC_005045.1 | + | 21760 | 0.69 | 0.172542 |
Target: 5'- cCUGCuagugaacaaccUCGCUGccaAGCUGGCgCGGUcgcuguuccccacGGGCa -3' miRNA: 3'- -GACG------------AGCGAC---UCGACCGgGCCG-------------UCCG- -5' |
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22267 | 3' | -62.3 | NC_005045.1 | + | 33845 | 0.69 | 0.168435 |
Target: 5'- -gGC-CGCcccUGGGCUGGCCCGccgagccaucaGCgAGGCa -3' miRNA: 3'- gaCGaGCG---ACUCGACCGGGC-----------CG-UCCG- -5' |
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22267 | 3' | -62.3 | NC_005045.1 | + | 5305 | 0.69 | 0.168435 |
Target: 5'- uCUGCcCGCU--GCUGGCacaCGGCcaGGGCa -3' miRNA: 3'- -GACGaGCGAcuCGACCGg--GCCG--UCCG- -5' |
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22267 | 3' | -62.3 | NC_005045.1 | + | 41989 | 0.7 | 0.147176 |
Target: 5'- gUGUggGCUGGGUUGGCUgGuGUGGGCg -3' miRNA: 3'- gACGagCGACUCGACCGGgC-CGUCCG- -5' |
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22267 | 3' | -62.3 | NC_005045.1 | + | 34250 | 0.72 | 0.111842 |
Target: 5'- -gGC-CGCUcAGCauUGGCCCGcGCAGGUa -3' miRNA: 3'- gaCGaGCGAcUCG--ACCGGGC-CGUCCG- -5' |
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22267 | 3' | -62.3 | NC_005045.1 | + | 33653 | 0.79 | 0.029296 |
Target: 5'- cCUGCUCGUUGAGCUGGUCgCGGaCAGcCa -3' miRNA: 3'- -GACGAGCGACUCGACCGG-GCC-GUCcG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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