miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22269 3' -57.5 NC_005045.1 + 24295 0.67 0.484618
Target:  5'- gCGACCugcguggcucgaACGUGguCCGCCUgGAUCGCc -3'
miRNA:   3'- gGCUGG------------UGUAUguGGCGGGgCUGGUG- -5'
22269 3' -57.5 NC_005045.1 + 22323 0.67 0.484618
Target:  5'- gCCGACCugGaACcUCGCCCCuggcGAgCACu -3'
miRNA:   3'- -GGCUGGugUaUGuGGCGGGG----CUgGUG- -5'
22269 3' -57.5 NC_005045.1 + 2192 0.67 0.474516
Target:  5'- cCUGACCACuccACGCaGUgCCGGCUACc -3'
miRNA:   3'- -GGCUGGUGua-UGUGgCGgGGCUGGUG- -5'
22269 3' -57.5 NC_005045.1 + 41390 0.67 0.46452
Target:  5'- gCUGGCCGUA-ACACCGgCCUGACCu- -3'
miRNA:   3'- -GGCUGGUGUaUGUGGCgGGGCUGGug -5'
22269 3' -57.5 NC_005045.1 + 4046 0.68 0.454635
Target:  5'- cUCGGCC-UGUACuGCUGCCUCGGCCuGCu -3'
miRNA:   3'- -GGCUGGuGUAUG-UGGCGGGGCUGG-UG- -5'
22269 3' -57.5 NC_005045.1 + 25726 0.68 0.444866
Target:  5'- aCUGucCCGCAUGCAcacCCGaUCCCGuCCGCu -3'
miRNA:   3'- -GGCu-GGUGUAUGU---GGC-GGGGCuGGUG- -5'
22269 3' -57.5 NC_005045.1 + 14283 0.68 0.444866
Target:  5'- gCCGGuaacCCGCAaa-GCCGCCCgGACgACc -3'
miRNA:   3'- -GGCU----GGUGUaugUGGCGGGgCUGgUG- -5'
22269 3' -57.5 NC_005045.1 + 18748 0.68 0.444866
Target:  5'- uCCGGCCAgG---GCCGCCCCaggucauuGCCGCc -3'
miRNA:   3'- -GGCUGGUgUaugUGGCGGGGc-------UGGUG- -5'
22269 3' -57.5 NC_005045.1 + 41191 0.68 0.439061
Target:  5'- aCCGGCCugugccugcuGCugucguugacagccuGUGCaACCGCCCCGGcgcCCGCu -3'
miRNA:   3'- -GGCUGG----------UG---------------UAUG-UGGCGGGGCU---GGUG- -5'
22269 3' -57.5 NC_005045.1 + 12160 0.68 0.435215
Target:  5'- aCCGACCAgGgugagugGCACUGgCCC-ACCAUc -3'
miRNA:   3'- -GGCUGGUgUa------UGUGGCgGGGcUGGUG- -5'
22269 3' -57.5 NC_005045.1 + 11726 0.68 0.429482
Target:  5'- uCCGGCC-CGUGCggugacaucgagaauACCGCCCucguguucuaCGGCCAg -3'
miRNA:   3'- -GGCUGGuGUAUG---------------UGGCGGG----------GCUGGUg -5'
22269 3' -57.5 NC_005045.1 + 17294 0.68 0.425686
Target:  5'- gCCGugUACuucaacgACGCCGagCCGACCAUc -3'
miRNA:   3'- -GGCugGUGua-----UGUGGCggGGCUGGUG- -5'
22269 3' -57.5 NC_005045.1 + 9462 0.68 0.425686
Target:  5'- aCGGCCcaACGaggGCGUCGCCCUGGCCGg -3'
miRNA:   3'- gGCUGG--UGUa--UGUGGCGGGGCUGGUg -5'
22269 3' -57.5 NC_005045.1 + 18786 0.68 0.425686
Target:  5'- aUGugCugGUACGCCGCaCCaagcaccaGACCAa -3'
miRNA:   3'- gGCugGugUAUGUGGCG-GGg-------CUGGUg -5'
22269 3' -57.5 NC_005045.1 + 39948 0.68 0.416282
Target:  5'- gCGGCCcauCAUGCAgCGCCaCCGucugaucuuCCACg -3'
miRNA:   3'- gGCUGGu--GUAUGUgGCGG-GGCu--------GGUG- -5'
22269 3' -57.5 NC_005045.1 + 28637 0.68 0.415349
Target:  5'- -gGGCCACcgcaucgacggAUGCACCcuugacgccgaacGCCCCGGCCu- -3'
miRNA:   3'- ggCUGGUG-----------UAUGUGG-------------CGGGGCUGGug -5'
22269 3' -57.5 NC_005045.1 + 33142 0.68 0.407007
Target:  5'- uCCGGuCCGaugcugACACgGCCCUGAgCCGCg -3'
miRNA:   3'- -GGCU-GGUgua---UGUGgCGGGGCU-GGUG- -5'
22269 3' -57.5 NC_005045.1 + 23309 0.68 0.407007
Target:  5'- cCCGACCcaGCAgccGCAacCUGUUCCGACCAg -3'
miRNA:   3'- -GGCUGG--UGUa--UGU--GGCGGGGCUGGUg -5'
22269 3' -57.5 NC_005045.1 + 22533 0.68 0.407007
Target:  5'- aUCGACUACc-GCACCcuugGCCUCGuCCACg -3'
miRNA:   3'- -GGCUGGUGuaUGUGG----CGGGGCuGGUG- -5'
22269 3' -57.5 NC_005045.1 + 6028 0.69 0.38885
Target:  5'- uCCGGuCCGCAaGCuuCCGUaCCCGGCUGCg -3'
miRNA:   3'- -GGCU-GGUGUaUGu-GGCG-GGGCUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.